RNA id: TU222805



Basic Information


Item Value
RNA id TU222805
length 921
lncRNA type sense_over
GC content 0.34
exon number 1
gene id LOC122327113
representative False

Chromosome Information


Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 7020754 ~ 7055562 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


AGCGctgtcatttatattaattcatttgtgaATTATGCATCATTTGTCCATTAATGCTTTTTGAGACATAGGGAAATTTCTCCGGTTGGCGGATGCAGTTGATCAGTATTTGAGATGGTCCGTCtggatgtgtttgtatgtgtgcgtgATGTCAGTTTCCATTAATTGGGCTTCATTCAAAATCGGTACCAAAATTGTTTGCGCAACTTGCGATGCAACGTCTGTAAATCACGTAGGAGAACGCAACATATAGCTCTTACGAAACTGATTGTCCTGAAACGCAGTAAATGACTGATGTTTATATGAACAGAAGGTTGggatgcatatatatttatgggGAAAAGCAAGGGCGTTTACTGAAAGCCAGTAATAAAGCAGTTTAGCAGTACGAAAAAAACATGACACTCTTCCGTAGATGTCACTTGTAGTTCTGAACCCTTCTCTCTATTTCATTTTGTGAGATTAGATTTTGGAAAGACGATTCTAGATCAAATTCAACCTACCTTTTAGATGCAGGTGTTCATGTGTATAGTGAATCCAGAAGCAACCCGTTCTTGTGACGAACGCGTAATCATTTGTAAGAGTTAACCAGGTGATTCAGATAAAGGCGTAAAATAAGTGGACTTGTACATGTTGATTTGTctcaattacagtaaaaattgtatacaaacataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaattaaaattaaataaataaaagggcAAACAtgtaaaagatataaaaatttTATCATGGTTGAGTTATACAAACTAGTATAATCTATTACGATTATTAATACGGTTAACTGAAATTATTATGCGTTTGAAGTGAGACCATGTTGTCCAGAACTTAAGCTTTTCAAAAACCAGGTTTGTTTTGTCCGTGAAAAGAGATTCTGGAAGCTGAAATTGTTGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU222802 lncRNA downstream 15316 7005056 ~ 7005447 (-) True G150538
TU222764 lncRNA downstream 16645 7002960 ~ 7004118 (-) True G150503
TU222754 lncRNA downstream 80137 6939618 ~ 6940626 (-) True G150494
TU222750 lncRNA downstream 117948 6899243 ~ 6902815 (-) True G150490
TU222748 lncRNA downstream 133627 6886549 ~ 6887136 (-) True G150488
TU222806 lncRNA upstream 718 7022401 ~ 7022697 (-) True G150542
XR_006247727.1 lncRNA upstream 149659 7171342 ~ 7174445 (-) True LOC122327846
TU222848 lncRNA upstream 174670 7196353 ~ 7196683 (-) True G150564
TU222856 lncRNA upstream 209007 7230690 ~ 7231488 (-) True G150571
XR_006247596.1 lncRNA upstream 268989 7290672 ~ 7296555 (-) True LOC122327085
XM_043222301.1 mRNA downstream 18216 6997908 ~ 7002547 (-) True LOC122327118
XM_043222297.1 mRNA downstream 26129 6986565 ~ 6994634 (-) True LOC122327115
XM_043222299.1 mRNA downstream 48803 6962514 ~ 6971960 (-) False LOC122327116
XM_043222298.1 mRNA downstream 48805 6962514 ~ 6971958 (-) True LOC122327116
XM_043223882.1 mRNA downstream 86190 6929150 ~ 6934573 (-) True LOC122328177
XM_043223523.1 mRNA upstream 36474 7058157 ~ 7106640 (-) True ahr2
XM_043223787.1 mRNA upstream 213218 7234901 ~ 7283785 (-) False cntnap5b
XM_043223788.1 mRNA upstream 213218 7234901 ~ 7283774 (-) False cntnap5b
XM_043223786.1 mRNA upstream 213218 7234901 ~ 7283774 (-) True cntnap5b
XM_043222264.1 mRNA upstream 365374 7387057 ~ 7389184 (-) True s100b
TU222752 other downstream 107205 6906000 ~ 6913558 (-) True G150492
TU222739 other downstream 131106 6854770 ~ 6889657 (-) False nab1a
TU222740 other downstream 139294 6854770 ~ 6881469 (-) False nab1a
TU222746 other downstream 151217 6867843 ~ 6869546 (-) False mfsd6a
TU222738 other downstream 163900 6854770 ~ 6856863 (-) False nab1a
TU222808 other upstream 8624 7030307 ~ 7055202 (-) False LOC122327113
XR_006247718.1 other upstream 588173 7609856 ~ 7618398 (-) False LOC122327776
XR_006247717.1 other upstream 588173 7609856 ~ 7618398 (-) True LOC122327776
TU223633 other upstream 1862438 8884121 ~ 8886941 (-) True G151107
XR_006247692.1 other upstream 1991865 9013548 ~ 9171931 (-) False nfia

Expression Profile