RNA id: XM_043222295.1


Basic Information

Item Value
RNA id XM_043222295.1
length 4825
RNA type mRNA
GC content 0.46
exon number 14
gene id LOC122327113
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 7020754 ~ 7055562 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

caaaaaaaagtcCTCTGCTCCCTTTCTGGCTAGACGTGTCCTGAAGTCTAATTATTATTACCCAGACTCGCCAGGTTCCTCCAGTCCGGCATTTaatctcattaatattcataatccCGAGCACGGTTCGCCGAGGCCGACTTCAAACAGCGctgttaatattcatgagcgaGTATTCCTAATTTTGAAGCGCGTCGACCAATCGCAGGAGACGCAAAGCCTGACGTCCCGTATCCTAGGAGATTTTTCCCCTTTGCCTTTAAGCCGTGGCCTCTGATGCTCCGCGCGCGCTCCTGCGCAAATCTGTGCCGGTTGCCTGGTCAACCGAATGCGCGTGCCCTGCAAGCCGGTGTCGGGGGCGCGCAGTTGGGGGACTTAGCGGAGCAGCtcgggcaaaaaaaaaaaaatgaattagacGCGAAGCTAAAACAAACTATGACCGGATTTGGTTTATTCTGCGCAAATGTAGATCGTAACGTATCGTTTTGGCGTCGGAGGGCTGTTTAAGCGAGCTCGGCGGCACTGAGGATGAAGGACGTGATGAAGAAGACCTGCTGTCACTTCTCGCGCGAATGCTGAAGTCAATTTAGAGACAAATCTCGCTTTTGTCGATTAAAGTTTATTAGACTGATGTTTCGTGCGGCTTGAGGGAGCAGGGACACCGGGTGCCTTTTTCGCCCAGTTTATTGCTAGGatatatttattacactttttgaATTTTAACACGCATGACCCCCTACAAGACGCGGCTTTTTCTTGTTAACTGCTTTTTCGTTTAAAATTggattttttattactttttttttctgtggtaaaTTGTGGGTTGAATTCATTGGAGCTGAAGAGTTGGACCGTCCAGACGCCTTAAGCATGTACGCGGGacgaaaaagaagaaaaccgGTGCAAAGAACGGTGAAGCAGTCCCCGGCCGAAGGGGTGAAGTCTAACCCGTCCAAGCGCCATCGAGATCGGCTGAACTCGGAGTTGGACCGGTTGGCCGGCCTGCTTCCGTTCCCGGAGGAGGTGACGAGCAGCCTGGACAAGCTCTCCATCCTGCGGCTGAGTGTCAGTTATCTGCGCGCTAAGAACTTCTTCTTCGTCGCTTTGAAAAACCACAGCTCCAATGGTTTGTCGGCAAACAACAGTAACCATGACAAGAGTAAAGCAACGGGATTGGTTGAAGGCTGGCTGCATGAGGGAGAGCTCCTGCTACAGGCTCTCAATGGCTTTGTATTGGTGGTCACCGCTGAAGGGATCATTTTCTACTGTTCTCACACCATCCAGGATTACTTGGGATTCCACCAGACAGATGTGATGCATCAAAATGTGTTCGAACTCATTCATACTGAAGACCAGCAGGCCTTCAGATGCAACTTGCACTGGGCCTTGAACCCACCTCCAACCAGCACGCAGACAGAAGAATCCGCAGAAGATGGAGATCTCCCAAGTATGTCGCTGGTGACATGCAACCCTGACCAGCTGCCCCCCGAAAACTCCTCTttcctggagagaaattttgtCTGTCGCTTCCGATGCCTCCTAGACAATTCTTCAGGATTCCTGGCCCTGAACCTTCAAGGACGTCTGAAATTCCTGCATGGGCAGAACAGGCGATTGGATGATGGAGGCCAAATGCCGCCCCAGCTCGCCCTATTTGCCATAGCAACACCCCTCCAGCCTCCTTCCATTATGGAGATCCGAACCAAGAACATGATTTTCAGGACCAAACACAAGTTGGACTTCACCCCAATGGCCTGTGATGCCAAGGGTAAAATCGTTCTTGGCTACACCGAGGCAGAGTTGCGAGTTCGAGGTTCTGGGTACCAGTTCATCCATGCAGCTGATATGCTGTATTGTGCTGAGAACCATGTCAGGATGATCAAGACTGGAGAAAGTGGCCTGACTGTGTTTAGACTGCTTACAAAGGACAACCGCTGGAAATGGGTACAAGCTAATGCTAGACTCGTCTACAAAAACGGCAAGCCTGACTACATCATTGCCACCCAGAGGCCACTTGTAGAAGAAGAGGGCGGAGAGCATTTGAGGAAGCGATCTATGCATCTTCCATTTACTTTTGCTACTGGAGAAGCTCTGCTGTACCAAATCAGCTACCCCATGCCAGGCTTCCCCGACACCCTTCAAGGCAAAAGCAAgaacaacaaaaccaaaaagagcAAGGTGGACAAAAGTTCAAAGGATGATGTGGACCCAAGTTCACTTCTGGGAGCCATGATGAGACAAGACGAGTCTGTTTATGTTTGCCAGCCTGCTATGGAGCCTAGAATGTCATTCCACAGTAGTCTCTTCAGTGAGCAAGCAGAGACTAGTaccttctcttcttcttctgcgGAAAATGAAAATTGGAATCCTGTGCAGAATGGCATAACTGCAGTCTCCAAACAGGAGCCATCAAGTTTTGACCCACTACTGGCCACATTAGACTCTCTGTCCCTGGAAAATGAGGAAAGCTGCTCCAACAGTGAGCTATTCACTGCCCTGGAAAACCTTGGGCTCAATGCAGAGGACCTAGAATTGCTACTTCTAGATGAAAGGATGATCCAGGTAGAGATGGAACCAGATTACATCCCATCTTTGAACGATCTTCTAACCAACAACGAAATCCTTTCCTACGTCCAAGACACACTGGAGAACCGGATCGAGAACTCGACAGATACTCAAAACCCTCCCATGGCATTAGATTCTGCTGAACCCCCTGAGCCATGTTCTGCTTCCGAGTCAGCTTCTCAGATTTCTTCCTCCATGCCTGATCCTCACGTTCCTTTCTGGCCACAAAAACAGATAACACCCATAGTTAATCTCTCACAGCGTATGCAGCAACATCTCGATGGCCAGACGGTTTGCCACAAAACCGAGAGCTGGATCCAGGCACAAATACCTCAGGTGTCTACAACAGACTCTGAGACAACTGCATTTACCCAGCATGATACTTTATTGGTAAACTCGGTATCAGCGGTACACAATGGCCACTGGgtccctgaacacacacaagcCAACTTGAACTCTCAATCTGTTGACAAGATAACAGGAATTAGTAAAGTACAATCACAGCAATGGCAGCACAACCAGTTGCTTGACCCATTCcagtataaacaaaaaacagctgtgGGCAGTGATACCCCTCCAAACGGGGTCTACAATGATCCACAGTGGCATGGATACAACTTCACAGACCAGTTGGTCACAAATGGACCTTGTTTTCCCAATGGCCAgatggcacacacacaaacagtgggTACACATGTTGATTACAACATAACCGACAATTCAGGGGTGGAGTTTACAATGAACATCAGTACAGCTGGGGATGCAGGGCAGTTTCAGGGAGCCATGGCCTCGTCTTCGTCCTATCAGCAAGTTTATcagaaacagcagcagcagcagcagcagcagcagccaaaGGTCGCACCCACTTATTACGCCTCCTATACCAAACAGAACTCCTCTCTGGAGCATATCTTGGGATTAGCCCCACCTTCAAACCTTCCCTCATTGACAAATTATAGCTCGGAACTGACCCATGACGCCACCCACAGTAAGaTTGAGACGGGCTTTATACTCAACTCTGCTAGTGTGGCCTACACAGGAAGTTGTTTGGTCCCCAACGGCAATGCAGTGGCCACACCTGGCAACAGTCCCCACCTTCCTGAGCCACTCCCACCCCCAGACCCTCAGACCACTGGTTTCTACCTCTGAACACACTCAATACAGATCCGTCCGCAAAGATGCCATCAATCATGAGAAcactgtcaaataaataatgcaaaaatgcaatttcGAGGTTTGCTCATCCacttgaataaatgaattttaatttaaattaaaatgagccaGACTGACCTCTAGAATATCAGTTGCTGAATACTCCACCCAAGATAGCGctgtcatttatattaattcatttgtgaATTATGCATCATTTGTCCATTAATGCTTTTTGAGACATAGGGAAATTTCTCCGGTTGGCGGATGCAGTTGATCAGTATTTGAGATGGTCCGTCtggatgtgtttgtatgtgtgcgtgATGTCAGTTTCCATTAATTGGGCTTCATTCAAAATCGGTACCAAAATTGTTTGCGCAACTTGCGATGCAACGTCTGTAAATCACGTAGGAGAACGCAACATATAGCTCTTACGAAACTGATTGTCCTGAAACGCAGTAAATGACTGATGTTTATATGAACAGAAGGTTGggatgcatatatatttatgggGAAAAGCAAGGGCGTTTACTGAAAGCCAGTAATAAAGCAGTTTAGCAGTACGAAAAAAACATGACACTCTTCCGTAGATGTCACTTGTAGTTCTGAACCCTTCTCTCTATTTCATTTTGTGAGATTAGATTTTGGAAAGACGATTCTAGATCAAATTCAACCTACCTTTTAGATGCAGGTGTTCATGTGTATAGTGAATCCAGAAGCAACCCGTTCTTGTGACGAACGCGTAATCATTTGTAAGAGTTAACCAGGTGATTCAGATAAAGGCGTAAAATAAGTGGACTTGTACATGTTGATTTGTctcaattacagtaaaaattgtatacaaacataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaattaaaattaaataaataaaagggcAAACAtgtaaaagatataaaaatttTATCATGGTTGAGTTATACAAACTAGTATAATCTATTACGATTATTAATACGGTTAACTGAAATTATTATGCGTTTGAAGTGAGACCATGTTGTCCAGAACTTAAGCTTTTCAAAAACCAGGTTTGTTTTGTCCGTGAAAAGAGATTCTGGAAGCTGAAATTGTTGAATGTGTTTAG

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0004874 obsolete aryl hydrocarbon receptor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09093 AHR; aryl hydrocarbon receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222802 lncRNA downstream 15307 7005056 ~ 7005447 (-) True G150538
TU222764 lncRNA downstream 16636 7002960 ~ 7004118 (-) True G150503
TU222754 lncRNA downstream 80128 6939618 ~ 6940626 (-) True G150494
TU222714 lncRNA downstream 81754 6822203 ~ 6939000 (-) False glsa
XR_006247727.1 lncRNA upstream 115780 7171342 ~ 7174445 (-) True LOC122327846
TU222848 lncRNA upstream 140791 7196353 ~ 7196683 (-) True G150564
TU222856 lncRNA upstream 175128 7230690 ~ 7231488 (-) True G150571
XR_006247596.1 lncRNA upstream 235110 7290672 ~ 7296555 (-) True LOC122327085
TU222888 lncRNA upstream 353851 7409413 ~ 7423399 (-) True G150596
XM_043222301.1 mRNA downstream 18207 6997908 ~ 7002547 (-) True LOC122327118
XM_043222297.1 mRNA downstream 26120 6986565 ~ 6994634 (-) True LOC122327115
XM_043222299.1 mRNA downstream 48794 6962514 ~ 6971960 (-) False LOC122327116
XM_043222298.1 mRNA downstream 48796 6962514 ~ 6971958 (-) True LOC122327116
XM_043223882.1 mRNA downstream 86181 6929150 ~ 6934573 (-) True LOC122328177
XM_043223523.1 mRNA upstream 2595 7058157 ~ 7106640 (-) True ahr2
XM_043223787.1 mRNA upstream 179339 7234901 ~ 7283785 (-) False cntnap5b
XM_043223788.1 mRNA upstream 179339 7234901 ~ 7283774 (-) False cntnap5b
XM_043223786.1 mRNA upstream 179339 7234901 ~ 7283774 (-) True cntnap5b
XM_043222264.1 mRNA upstream 331495 7387057 ~ 7389184 (-) True s100b
TU222752 other downstream 107196 6906000 ~ 6913558 (-) True G150492
TU222739 other downstream 131097 6854770 ~ 6889657 (-) False nab1a
TU222740 other downstream 139285 6854770 ~ 6881469 (-) False nab1a
TU222746 other downstream 151208 6867843 ~ 6869546 (-) False mfsd6a
TU222738 other downstream 163891 6854770 ~ 6856863 (-) False nab1a
XR_006247718.1 other upstream 554294 7609856 ~ 7618398 (-) False LOC122327776
XR_006247717.1 other upstream 554294 7609856 ~ 7618398 (-) True LOC122327776
TU223633 other upstream 1828559 8884121 ~ 8886941 (-) True G151107
XR_006247692.1 other upstream 1957986 9013548 ~ 9171931 (-) False nfia
XR_006247693.1 other upstream 1957986 9013548 ~ 9171929 (-) False nfia

Expression Profile