RNA id: TU223441


Basic Information

Item Value
RNA id TU223441
length 2178
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G150983
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 9145211 ~ 9147388 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAAGTTCTGCGAGAAGGCGCTGAATGCCAAGGCAACTGTGCCAAGGCTTTTGGAGGCAGAGTGGCAAAGACGAGGCAAAAACTGCAGTGCGTAAAGGACAACGGAGCGAACTGCAGGGATCGAAGTCTTCGAAACGAATTAGAGTTTGGGTTTTATTGTGCGCTTTCAGCTCGGTATTAAATGCGGCCGGTATCGCGGGACCCGATCAGGTAAGCGACCTAGCCCGCTCGGATGGAGTTTCTTCCTAACTTGTGTGGCGGACGTGAGTACAAATCACTTTTTATTCGTTATTAGcgcaaaaagaaagaagagggGGGGAAAGCCGAGCAGGCTGCGTCTGGTTTTATTTGACGATCCGTTCGGGCTCGAGTCCGCGCGCGcttgcgtgcgtgcgtgcgtgcgtgcgcgcgagcgcgtgtgtgtgtgtggagaggaAAAGTTTCATTGAACATCTCGATAGTCTTCAggggtaaaaaaaaagccataaaacTCAGCGTTAGGTCGCCATCTAATGAAAAACTATCCTCGGTGTGACTCCGACGcaagtaaataaaaacgaaGCAAGTTGGCTAACGTTTTTATCTCTTTAAAAGCAGGCAATGAAAGAACAAATAagcaagcatttttttcttaaaataaatcacttgGACATTCAGGCACCTGCGAGAACTTGAACTAATGATTTCTTTAGCATACTGATGCTTATGAATTCGTTTGAATGACAACGTCCGCTCTATTTTTACGCAATTGTTAATTAaacttttcttaaaaacatatcCGGAGAGCGCCAAGATCGCTTTTAAAAACGCGTAGCCTCGCGCAGTTCTCGCGGTAAAGCACGTATCTTAATTTGTATGCGAATTAATTTGTAAAGCGGCAACTCGAAATATCGACATATTTAAATGATCGCGGTTTGCATAAAGGCATTCCTGTCAAACGGATCCGTTCTATTTACGCGCCAGGTGAAAATTAACCGGcaaacaacataataaaaaataaatgataaaataaacatacataggCAGTGCGTTGGTACAATGAAAGAAATACGAAGCCATAAAGAGAAAATTATTCTgatgtgggggaaaaaaagtacgCTTTCACTGTAATCGTGTCTAGTGACTAATTAAAAGCTACATAAAGAGAATAAGGTATTTTTAGTTAAGTTTTTGTAGGAATTActccaaaaaaattttttaatgcagaacagAACTCCTCAAAATGccaaataatataaacaaagcAGAACATAAATAATGCTGCTGCTTTAAAtccaaatgtgaaaatattaccgtgaaaaaaaagaaaaaatatattaacataataacaacaacatctTTATTAAACAACGCTATTATtcgtattattataaaaagattCATAAACGTATTACCTCATGCATATAATCCCAAAACATAGTGTTATGGTAACAGTGCCATACCAATAATTAAcgatttcattattattataatggcTCTTGTtctaattattaatatcatttagaatataaatgattatttataatcGACTCAATGCTAATCATAAATCATTAATTCAGCCCGAAGTCTTTTCTCACAGTAACCGGTCAACCATCAAATATAGGTAGAGACTCCACCTAGAGGCTGCAATCCGAACTGAAGACAAGATTTgatattatatctatatatctatatatatatatatgggttaGGGCTAGGGGAGTTTTTAATAGTAAACGAGTTACATTTTGTTTGgtgaagcataaaaaaaacGCAGAAAAGGTCGATATTTGTGGATGAATTGTATTTGAACTGCTGTATTATTTATGAGAACGCATGCGCTCGATATTCCTGTTAAGCCATGTTCAACATTGGTGTGCAAAATACACATCTGGTTTTATTAATACGCTACTGCATTAAGCTTAATGATCTGGAGTGAACTGGAGATGTGCAACTaattcaccttttttttcccctgcattCCATTAAAAGCCACAAGAGGGTGATCTTTCTATACAGAAGGGCCTTTTGACGCTCAGTTCAGCGAGAGCGCTTTGTCCATCGCTGCTGTAAAACATCACATGCACTGCAATAAAGGCAAGCTGGAAATCAAGACCGATTCCTCTCGattatttaaaccattttgGGAATGGTAAAAGCGGTTCTGTAAATGCCACCCAAGCTCGGGAGTCCCGTGCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247700.1 lncRNA upstream 74039 9068732 ~ 9071172 (+) True LOC122327612
TU223424 lncRNA upstream 115301 9025901 ~ 9029910 (+) True G150970
TU223423 lncRNA upstream 131359 9013534 ~ 9013852 (+) True G150969
TU223420 lncRNA upstream 149728 8995206 ~ 8995483 (+) True G150967
TU223417 lncRNA upstream 162855 8982116 ~ 8982356 (+) True G150964
TU223722 lncRNA downstream 130302 9277690 ~ 9283004 (+) True G151163
TU223740 lncRNA downstream 213040 9360428 ~ 9365322 (+) True G151178
TU223767 lncRNA downstream 307913 9455301 ~ 9464513 (+) False march2
TU223772 lncRNA downstream 325598 9472986 ~ 9475031 (+) True G151194
TU223789 lncRNA downstream 367352 9514740 ~ 9515568 (+) True G151210
XM_043223444.1 mRNA upstream 140306 8995971 ~ 9004905 (+) True tm2d1
XM_043222327.1 mRNA upstream 253012 8890622 ~ 8892199 (+) True pdzk1ip1
XM_043223369.1 mRNA upstream 258783 8880298 ~ 8886428 (+) False tal1
XM_043222439.1 mRNA downstream 50636 9198024 ~ 9223536 (+) True frem1b
XM_043222440.1 mRNA downstream 50661 9198049 ~ 9223536 (+) False frem1b
XM_043222443.1 mRNA downstream 76422 9223810 ~ 9227301 (+) True atpaf1
XM_043222442.1 mRNA downstream 81020 9228408 ~ 9235230 (+) True rab3b
XM_043222441.1 mRNA downstream 88711 9236099 ~ 9248034 (+) True nrd1b
TU223418 other upstream 156520 8988186 ~ 8988691 (+) True G150965
TU223398 other upstream 223244 8921698 ~ 8921967 (+) True G150946
TU223397 other upstream 225431 8919279 ~ 8919780 (+) True G150945
TU223385 other upstream 242900 8901143 ~ 8902311 (+) True G150940
TU223378 other upstream 253130 8890643 ~ 8892081 (+) False pdzk1ip1
TU223769 other downstream 307913 9455301 ~ 9530165 (+) False march2
TU223817 other downstream 430291 9577679 ~ 9580151 (+) True G151232
TU223952 other downstream 740812 9888200 ~ 9893489 (+) False borcs8
TU223980 other downstream 776159 9923547 ~ 9963634 (+) False LOC122328159
TU223981 other downstream 781291 9928679 ~ 9963634 (+) True LOC122328159

Expression Profile