RNA id: TU223633


Basic Information

Item Value
RNA id TU223633
length 2712
RNA type TUCP
GC content 0.45
exon number 3
gene id G151107
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 8884121 ~ 8886941 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCAGAATCATATTCCCAGGGTTCAGACGCCCATGTAACGTCCTGTTATGACCCTGACCGTTCTCACACCttcaaaaccttaaaataaGAGCGGGGCCTACCTTCGTTTTCCTCATGCTAAGCGCCTCCAGTATATAGTTGAATCTAAATCTTATTAAAGGTATTTCTTGTAATCACGTCCCACTGTGTTCATTTTTCATGTCGGggatttaacattttgttccTTACCTAAAAAtacattgggttttttttttcttcctttaacTCCCGACTAGCATGAGTGATTTGACAGTATTTTCATCTATCTCGCATGTCCCttcaatgcatatttttttctatttaatccCCCCCTTCTCTACCTTTACAGTTGTCATGGCAACAGAAAAGACTATTATAATTCAGACATTTTACAATATGAGCGTCATGTCCGCGCTCGCAGTGtttttcagaagaacagcaCACGCGTTCaggtttgtcttttttatttttgtgggtttttatataaaatttgtgtGATATAACATTGCATATATTCATAGATAGATTTTTCACCTTACGACAAAGGTCTTTCTactaaatatcacattaaaataaccatttttgtttgcttgcttgttttaATACCCAATAGAAGACTTAAAGGTACCAAGACTGGTTACTCAATCCTCTGCTAAAAAGCAGATCAAGTTCATACAAGTCAAATAAAGTGACAGAACTTTACTCCGTGAAATGTAAATGCCGATTAATGGTGTACCATGATCACAATGCAAAAGAACAGTCTAAAGGAACATCGTTACAGACACACGACATTATCCCGGTCTATGTACACGTTCTTGTACCTCCTCCACCATTTTTCTTGTATGCGTGTGGGATTCGAGACATAATACCAAAAAACCATTTACAAAATGGCGTTTTTTTCCAAATAGCGTTTGGCCGCTATTGCCATTGACGTTAGCGATACTCAACTCATTACGATTCCCAGTATGTACACATTTGTCGTCGCACGGAGCCAAAAGCCGGGGGCACCCAAAATCAAGAGCGTCGTCGGTTTTTATCCCTTTACTCGCCCTCGTGTCACTTCAAACCAAACAATACAAGCGGTCTGTACAATAGAAGTCAACGGCGTCCGTCGACTTTCATTGAGCGGTTCTTCTAGGTTCCACGGAAAATCACATTTGGAGTGAcacgagggcgagtaaatgatggcaaaatacatttttggggggggggtggattattccgttttttttttgtttttgttcagttttttttttttagtccagCTGTTTCCAATGACCTCCTTCACAGCGGTGTACCTGATGAGATGTGGGTACCATTCAGTCCGTTTTCTCTCGTTCCCAGGTGGCGATCGGCAATTCCCAGCCTAAAGTGTGGACTTCAAAATCTACCTGACGTTCTCCACCCCGTACCGGCGTTTCACCGCGGAGGGCGCCTTTTTAGCGTCGAAGCGCGAAGAGAAGAGCTTAACAGAAAGTCATACGTAAGAATATGCTTGCACACGACATGAACATACGCTAGTTGAGGTCCATGAAGCACTGCGCCCCCTCTCAGTCCGTCGGCGCCGGATCAGTCATCGCTGGGCGTTCCCGTCGAGCGGGTGGCTGGAGTGATGCAGTCCCCTCGCCGAAGACCTGGACTCCACCGACGAGTCCTGGTCTTCGGTAAAGCTCTCCGGACTGGCGTCTCCGTCCAGCAGGCTCCCGCAGCTGGAGTTCGGGCTCAGCATCTCCTGAAGGAGGTCGTCCCGTGCCAGGGTGGCGTCTCGGGCGGCGCGGGCAGGGGCTTCGCCGCCCACCATGTCGTCCTGGTCGTTGAGGAGCTTGGCCAGGAAGTTGATGTACTTCATGGCCAGGCGGAGGATCTCGTTCTTGCTGAGCTTCTTGTCCGGAGGGTGGGTCGGGATGAGCTTGCGCAGCTCGGCGAAGGCGCCGTTCACGTTCTGCTGCCGCCAGCGCTCGCGGCTGTTCGTGAAAATCCGTCGCACGATTTTGGGCTGTGAACCTGCGGAGCAAAGGTAGCGCAGTCAGGTTTGGGGTTGTTCGTAACAAATCTGCGACGCGGTTGAGTGCTTTAACAGCGGTTTCCTTGTGAACACACCTAAGGTGTTCGCTCACTTCTCACTGATAGATTAGCTTTTTATCTCGCCCTATTTAGCTGAGAATTAATTAACCTTTCTATTATCTATGGCATTTTACATTCAATTATTCAGGGCCATTTCTCATCCTAGACAGCTCTGTTGGAACAGGGCTATCAATGCTTCACTTTGCCTGATGCACCAGTGACTTCATATAATTACACTTAGTTAAATGGATTCCCAACCTCTTGAGTTAAGGAATAATTTAAAGCGTTTTTCGAAAAGGCAGCGAGGGTAGCGTTACCTTTGATGCTCCTCTATATCGTATAAGAACACATTGTGTCGTGCATTCGATATTTTCGTCTCATCAGTATCCTGCTTTTCTGTCTCAGCACTCGCAGCCAAACACATTGActcatatttgcatttttataggCAACTCGCGGCTATCTCTCCAGTGcatacactgatttttttttttttcccaattggcaactgtaaccttttttttttttgtctctctcacATCCCTGATTACTGTCTGAAATCTTCTTTGTTTCACGAGATTATGTTGCTCCcagtttattttaagaagtGCATTTCTGTGCAATGCGGTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223606 lncRNA downstream 75586 8807108 ~ 8808535 (-) True G151086
TU223511 lncRNA downstream 276695 8600350 ~ 8607426 (-) False zbtb37
TU223514 lncRNA downstream 276695 8600350 ~ 8607426 (-) False zbtb37
TU223507 lncRNA downstream 384760 8499126 ~ 8499361 (-) True G151029
TU223485 lncRNA downstream 414869 8468471 ~ 8469252 (-) True G151015
TU223638 lncRNA upstream 28960 8915901 ~ 8917143 (-) False G151110
TU223639 lncRNA upstream 28960 8915901 ~ 8917143 (-) True G151110
TU223641 lncRNA upstream 61847 8948788 ~ 8949027 (-) True G151111
TU223642 lncRNA upstream 62675 8949616 ~ 8950059 (-) True G151112
TU223653 lncRNA upstream 258364 9145305 ~ 9147301 (-) True G151122
XM_043223183.1 mRNA downstream 27666 8849997 ~ 8856455 (-) True stx6
XM_043223068.1 mRNA downstream 58831 8819851 ~ 8825290 (-) True plekhb2
XM_043223396.1 mRNA downstream 78474 8801762 ~ 8805647 (-) True cts12
XM_043223470.1 mRNA downstream 83379 8786758 ~ 8800742 (-) False lama3
XM_043223469.1 mRNA downstream 83379 8786758 ~ 8800742 (-) True lama3
XM_043223442.1 mRNA upstream 5625 8892566 ~ 8996028 (-) False patj
XM_043223443.1 mRNA upstream 5625 8892566 ~ 8996028 (-) False patj
XM_043223433.1 mRNA upstream 5625 8892566 ~ 8996028 (-) True patj
XM_043223441.1 mRNA upstream 5625 8892566 ~ 8995343 (-) False patj
XM_043223439.1 mRNA upstream 5625 8892566 ~ 8995343 (-) False patj
XR_006247718.1 other downstream 1265723 7609856 ~ 7618398 (-) False LOC122327776
XR_006247717.1 other downstream 1265723 7609856 ~ 7618398 (-) True LOC122327776
TU222808 other downstream 1828919 7030307 ~ 7055202 (-) False LOC122327113
TU222752 other downstream 1970563 6906000 ~ 6913558 (-) True G150492
TU222739 other downstream 1994464 6854770 ~ 6889657 (-) False nab1a
XR_006247692.1 other upstream 126607 9013548 ~ 9171931 (-) False nfia
XR_006247693.1 other upstream 126607 9013548 ~ 9171929 (-) False nfia
XR_006247696.1 other upstream 126609 9013550 ~ 9171923 (-) False nfia
XR_006247694.1 other upstream 126609 9013550 ~ 9141867 (-) False nfia
XR_006247695.1 other upstream 126609 9013550 ~ 9141866 (-) False nfia

Expression Profile