RNA id: TU223772


Basic Information

Item Value
RNA id TU223772
length 2015
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G151194
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 9472986 ~ 9475031 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaaaaaaaacgaatcttGTCACTCAAGCCCAtgagttgtatttatttaaggaTCTGAACAAATGTACACACATCAGTCCATTGGTCGTGGTCTGTCCATAGAgataaatgtctttgctgtaCATCAATGTCAATAGACTCACATTTCATCATGCTCTTTTGCTATTTAGGGGGgcacacagctTGGAAGAGTAAGCGATTGATACAATTTTATGTCTTTGTATAGACTTTACAATCCCAACTGTAAAGTGTACACAcatgatacaaaaaaaacagacttgAACGAAAGAAAAACATCCTGGATGCTGGAAGAATGAGTGGGTTCGTGTGGACCTATAGGACACCGTTCGCAAGCCActtgtgcaaaataaaatacaaaagaaaccttcaaataacatttaaaatagattttatatgtatttaaagaTCTATGTACAAGTTCTCTAAGACACTATCATTGGTGAACCAGAAAGAAAGACCGAATCAGTGAATAGTAGGATTTAGGTTggcaaataaaatgattaaggCAACCAAAATATGCGTGTGCTACactttacaaatgtattactGCAGTAGTCCCTTTATTTTGGACACAGCAGCAACTGGCCACTGCACATGATAAGAATCAGTGTTGCACGCTTCCATTGTAAAGTGAGATGCTCGCTTAAAACCACAAATACACTCAATGCAtaggcacgcacacacacaaattctaTACACGTGGATTTACAATTGAATGCTATAACAAATATTTCTGATTGCGATTATGGTAACAAGTCGCTTTACATATTTGGCCTCCCACGTAATAAGTTTGGTCCCATCTTTCAGTTTAACATGTCTTTTAATAACCAGGCCGTGATCACTTTGTACTGGATTTTGGcgggaaaaaaatttaaatatatataaaaaaaaaggatcaggTGATGCGGAAAGTGTAAGTCCCTGTAACATCCAGCATATGTTATCAGTCCTAATTATTACgttaaaataaaacgtaaaaaaaaacatgggacTTTGGTTATTGCCAAATTTCACAAGTCAAACAGCCACTTGTTGGAATTTTCGTAACGTTGAACACTATTGCTGGcgtaatattttacagaaaaccaataaaaataaaacaatgtttgtgtattttatatatatatatatatatatatatatatatatgacctttttttaacagttacGAAACAAACAATGCTACCTGATAAAGGTGCATTAACAACTTAaggtcaacaaaaaaaaccaaaaacaaagtCTGGAGTCAAATCGGAAAACATGTTCACAGTATGTAAATTAGACAATTaaggaaacacaaaacaatccaaaaataataaacataaatagtcTCATTATTACTCATAAATACATCTGGACATTGGTATTACTACTTGCTTGGTGTTGTTTATGGAATGGGTGAAAGGACGATGAAAACTTAAGTTGCGAGAAAGTCCGACCAGTATAGCTTCCGGACGTCTGAAGAGTCCGGACCTCATAGCTGCCCCTCTTTCCTGAGGTCTGATTACTGTCGGGAAACATTGAATTTTATGCAATTAGCATGCAAGTGATCACAGTCAATGGGCCGTCAGCGTCGAGATTAACGAACCCAACACAACTACAGCAAAGCGCGCACTTACTGTTTCACTCTCCCCTTCATCCTCTGGCAGGGTTTTAGGCCCTGAGCTGAAGTGCAGAGGAGAATATACCCAGCTTTTGTCTTCTGGAGGCTGCTTTGACAAAAGCCAGACAGCAGAGGGCGCCAGAAAGAGTGGAGACAGAGACAGCCAGCGAAAACATGCAGAAGAAGAAAGACGAAGATCAGAAATGCAGCGGTAAGAAAGACAGACGTTAGTGAAAGGAGTTGTGATCGTTACCGAGGCGGGGAAAGTTGTTTGATAtacaatgcatatttattgGAATTTCTACGATTAAAATCGTAGAAAATTGTAGTTTGATATAAAATGAATCTTTTTCAAAATTCCAATAAATTCGCAAATCAAGATGAATGATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223767 lncRNA upstream 8473 9455301 ~ 9464513 (+) False march2
TU223740 lncRNA upstream 107664 9360428 ~ 9365322 (+) True G151178
TU223722 lncRNA upstream 189982 9277690 ~ 9283004 (+) True G151163
TU223441 lncRNA upstream 325598 9145211 ~ 9147388 (+) True G150983
XR_006247700.1 lncRNA upstream 401814 9068732 ~ 9071172 (+) True LOC122327612
TU223789 lncRNA downstream 39709 9514740 ~ 9515568 (+) True G151210
TU223818 lncRNA downstream 104040 9579071 ~ 9580151 (+) False G151232
TU223901 lncRNA downstream 125525 9600556 ~ 9667133 (+) True G151294
TU223922 lncRNA downstream 287123 9762154 ~ 9762419 (+) True G151308
TU223951 lncRNA downstream 413169 9888200 ~ 9893489 (+) True borcs8
XM_043223189.1 mRNA upstream 484 9465508 ~ 9472502 (+) True hnrnpm
XM_043223190.1 mRNA upstream 484 9465508 ~ 9472502 (+) False hnrnpm
XM_043223191.1 mRNA upstream 484 9465509 ~ 9472502 (+) False hnrnpm
XM_043223192.1 mRNA upstream 484 9466472 ~ 9472502 (+) False hnrnpm
XM_043223193.1 mRNA upstream 8479 9454838 ~ 9464507 (+) True march2
XM_043223798.1 mRNA downstream 28519 9503550 ~ 9506291 (+) True polr2eb
XM_043223913.1 mRNA downstream 127419 9602450 ~ 9612501 (+) True tm6sf2b
XM_043223912.1 mRNA downstream 138848 9613879 ~ 9619115 (+) True hapln4
XM_043223153.1 mRNA downstream 409481 9884512 ~ 9886217 (+) True LOC122327676
XM_043223154.1 mRNA downstream 409484 9884515 ~ 9886217 (+) False LOC122327676
TU223418 other upstream 484295 8988186 ~ 8988691 (+) True G150965
TU223398 other upstream 551019 8921698 ~ 8921967 (+) True G150946
TU223397 other upstream 553206 8919279 ~ 8919780 (+) True G150945
TU223385 other upstream 570675 8901143 ~ 8902311 (+) True G150940
TU223378 other upstream 580905 8890643 ~ 8892081 (+) False pdzk1ip1
TU223817 other downstream 102648 9577679 ~ 9580151 (+) True G151232
TU223952 other downstream 413169 9888200 ~ 9893489 (+) False borcs8
TU223980 other downstream 448516 9923547 ~ 9963634 (+) False LOC122328159
TU223981 other downstream 453648 9928679 ~ 9963634 (+) True LOC122328159
TU223982 other downstream 456108 9931139 ~ 9963634 (+) False LOC122328159

Expression Profile