RNA id: TU223901


Basic Information

Item Value
RNA id TU223901
length 336
lncRNA type read_through
GC content 0.42
exon number 2
gene id G151294
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 9600556 ~ 9667133 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAATTACAAGTACCCACTTTCCCATTCCACTGTTTGAGTCTGAGCATAAATACAGTTTGTTCGATGAGCGCTCACatcttttttttggtctttccTCATCATTGAGCATGGCTCTTATGCCCACCAGCGTTGTTCTGCAGGCATTGTCTAGCTTCACAGGTGTTGCTGTGAAGGCTTACAAGATTTGGAAAAGCCCAAGGGTGAACAAGAACTCACAAGGTTGCTACTGACCTCAACTGACATCCTCAACACAGGTTCGTACAAGAACCTTTTTGTGAATATGGAAAAATTCTTTGACCCACAATATGACTACGATTGCACAAATGTGAGAGATTA

Function

GO:

id name namespace
GO:0006950 response to stress biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223818 lncRNA upstream 20405 9579071 ~ 9580151 (+) False G151232
TU223789 lncRNA upstream 84988 9514740 ~ 9515568 (+) True G151210
TU223772 lncRNA upstream 125525 9472986 ~ 9475031 (+) True G151194
TU223767 lncRNA upstream 136043 9455301 ~ 9464513 (+) False march2
TU223740 lncRNA upstream 235234 9360428 ~ 9365322 (+) True G151178
TU223922 lncRNA downstream 95021 9762154 ~ 9762419 (+) True G151308
TU223951 lncRNA downstream 221067 9888200 ~ 9893489 (+) True borcs8
TU223957 lncRNA downstream 227913 9895046 ~ 9895327 (+) True G151333
TU223956 lncRNA downstream 228308 9895441 ~ 9896300 (+) False mef2b
TU223958 lncRNA downstream 229448 9896581 ~ 9896839 (+) True G151334
XM_043223798.1 mRNA upstream 94265 9503550 ~ 9506291 (+) True polr2eb
XM_043223189.1 mRNA upstream 128054 9465508 ~ 9472502 (+) True hnrnpm
XM_043223153.1 mRNA downstream 217379 9884512 ~ 9886217 (+) True LOC122327676
XM_043223154.1 mRNA downstream 217382 9884515 ~ 9886217 (+) False LOC122327676
XM_043223155.1 mRNA downstream 221030 9888163 ~ 9893507 (+) False borcs8
XM_043223156.1 mRNA downstream 221030 9888163 ~ 9893507 (+) False borcs8
XM_043223144.1 mRNA downstream 228615 9895748 ~ 9910793 (+) False mef2b
TU223817 other upstream 20405 9577679 ~ 9580151 (+) True G151232
TU223769 other upstream 70391 9455301 ~ 9530165 (+) False march2
TU223418 other upstream 611865 8988186 ~ 8988691 (+) True G150965
TU223398 other upstream 678589 8921698 ~ 8921967 (+) True G150946
TU223397 other upstream 680776 8919279 ~ 8919780 (+) True G150945
TU223952 other downstream 221067 9888200 ~ 9893489 (+) False borcs8
TU223980 other downstream 256414 9923547 ~ 9963634 (+) False LOC122328159
TU223981 other downstream 261546 9928679 ~ 9963634 (+) True LOC122328159
TU223982 other downstream 264006 9931139 ~ 9963634 (+) False LOC122328159
XR_006247720.1 other downstream 303489 9970622 ~ 9993441 (+) False gatad2ab

Expression Profile