RNA id: TU223965


Basic Information

Item Value
RNA id TU223965
length 4361
lncRNA type inter_gene
GC content 0.40
exon number 4
gene id G151337
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 10053918 ~ 10080145 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ctttttttttttttTCAGATGTAAAAAAGCTTTATTGAATTGATGTGTCATTCTCACAACACCAAGTTAGCACCTTTCTACACAAGCAAAATAGTCAAACTTCAATCTAAACGGAAGTGACATTTTGCAAGTTGACACTTTCTCTGCTTCCTTTTAGGAGATGGGTTCATCTGCACAGCACTGATTTCCATGAACTCTGAAACGGCAAAAACATGGTCTTAAGAAAACGAACAAAAGCATGCAAGTCAGTTAATGCCAACAGCCAAACAAGTGCCATCCAATAATCGTTTgaagttaaagggatagttctcccAAAGACAAAAACTGTCATTACtcactcatgtcattccaaacccataagacccaTGTTCACCTTCAGCACATAAATCAAGACTTTGAAAGCACACCGTACACGATCAAGCTCCAGAAACACAGCAAGGTTAATACCCATGTCCTGTGACATCAGGGCTTTAACCATAAATGACGAAACAAGATTACTTTGTGCACAAAACCAAAATTCAGCAATTAGTCTCCTACATGTCACCCTGTCATAATTTAGAGATCGGCTATTCTGTGTCAAACAAGTTAacgttcagatttaaaaaaaactaaaaaaaggcaCAGGGGACAAACTGTTAAAAGCATGTTATATAACCGTTATATGGGTTTTCGTCACACAAAATAAGTGTCTTCATAGCTTTGTAAAAGACGCCCTGACAACATGCATCATTTTACAGATGTCCTTGCAGTTTCTGGACTTGCATAATTTAAGGACCCTTGCCATCTATGGAAGCCTGAAAGgtcagatttaaaataaacttaatttcttcacccaggtttggaatgacaaaaGGCGAGTAATTAGGTAGTAGAACTCTCATGTTGATGATTAATGGGTTAGTTCACTCGTAAGTACAAAAGTAAACCCATACCTCTGTgtttttgccatgaaaatgaagtCAATTCAAAGTTGCTCCTCTAGGTTTTCAATTACAACACGTCAAGGGGACTCAGTCTGAAAAATAAGAGGGTATTTTAGTATACAGGagatgtaaaaacacaaaaacagaaatcatgCTCTTAAGATTTCCAAAAGACTAACACTTCTAGACTAAACAAGTGTGAAAAACCCGGTACAAAATTgtgaatgttaaaaacaaaaagggccAAACTTTTAACGGGTCTCCATAGTGAGTCGCTCAAGATGAAGTGGCGAAAAAGGTATCTctacaaaatgttaaattttgACGTGACTTAAACCTGACCAAAAGTAATCTTTAAAGTTGGTGCATACTAATTGGCGATCAGAACAGGGACTTAAAATCTCATTTCAAAGGCCACATGAGGTACTTTCCACCAAACACGAgcacactatttaaaaaaaaaaagtcgtcatgcagctttttttaaaggaggaACAGGAAGTGTTTTTGGGGGTTGTGGAACAGGATTGAACAGATTCTGGAGATGTAATCACTGGTCGAGGCAACATTCGAAGAAAACATGGACAATGAGAACTGTTGTAGGATGCGTACAGGAGAGCAAAAGGTTTTACCTCACATTACAGGCCTATCTCCACAAATGACCTAGTCAAGAGAGCAGCTTTCATCTCAGGATTCTTGAGTCGGAAGGCACAACACTTCATTCTCCAAGGACATTGGTGATTTCCGTAATTGCTAGCAGAGAACTCTTGGATCCAATGAAGCATTATACAGAGCCATTGCTTGCTATACCACAACGGCAACGTTTCATCTTTGTTAGCTTAATCTAATACTAAAGTTTCATTTGCCTGATGAAAAAATTTAGGATCCCAGATGTTAAATCCCCAGCTATCCACTCCATGACATTCACCTGGCTTGTATTGAGCTTTTTAATATCGAAGGCAAAAGAGAGCATTTTCCAACCATTTTTTAATGAGCTTCATGAAGCCAGattaatacaaaaagaaaaaaaagattctgaGGTGTTGATATACAGAACAGAGCACATTTCTTTCCAAGGAGGAACAAAATCTTGACATTTAAGAGGATAAGTTCAGTCCACAGTAgagcatacttttaaaaaataaaatttagacTGGTCAAAGAATAAAGCACCTTGGGGCACCGGTCCTAACGAGAGGCGGAATGACCCAGTGGTTTACTCTTTGGATAATGAATATTTACAAATCTTTAGCAATATCAAGGAGGTTTGCTGGAGACAACTCCAATGCAAAATGCCTACCTTGCTTCACTAAAGGAATGCATCACAAAATGAAGGTGGCAAGGAGCAATAAAGAACACATCACAGCTTATCAAGCTTCTATTGGAGGATCAGATTAGAATATTTTCAAGGTTccgttttaaaattgtttaaatgcaaatgctcCTCTAAGCACTTTAAGTGAGCCGATATTAAGAAATTGGTCCAAAGATCTTTGAGGAAATTGGTTTTTAGAAGCTATCAGGCTGTGTTGGACAGGTCAATTTTTACGCATGGTTTCAGAGACATTTCTTAAACACAcactaaaaaggaaaacaaaggaCAATTTCAAACCTCCGTGAGCATCTATAACACAAATCGCAAGGTAAAAATGGCAGATACAGGTAGCCTCACAGGGCTTGAAACTCGTACAGTAAGTGAATGCTCATGGATTTTAGGCAGCTCCTCAATGAGAGGAACATCCTGCGGATACTTGACACGGTAAAAAAGGAGTGTCTTTAATAGAACATTTGAATCAGAACACAAAACgtaaagaaaagtaaaacaaaaaaaaggtcttcCAAGAGCGCATCTTTTTATATACAGCCAGCGAAGGGATGATCTTGcaatcaggatttttttttactcgtgTGAAGCTGAGGACAAGAAGTAGGCAAAAGTGTAAAGGCACTGGAGCATTGTGAACATCCTTTCCAAACAGTGAACTGACACCAAGACATGATTCTTTTCCAACAAGGTCTTATGGACTATTCTGATCAAGTGCACAAAACCGACTTTAGTCACTACTATTGTACTTTTTGGCTTGTGGTCATCAATTCCAAGATAAAGGCAACCAAGTTGACTGAACTCAGAAGTTTGAAAAAGGCAGTTTTGTCTTTCTGCTTAGGTATAGACATTATTCTAAAACACCACAAGTGGGCTGAGAGCTATTGGTGCAGTTATCTAGTAAAATGAGTCGTTCTGAATAATACATACCATAGCTGTCGTAACTGTCTCTGTAGGATCCACCAGAACGGTCATATCCACCCTGGCTTCTAAAACCTGTTATCCCTGTATCCACCGCCGCTGCCACCGGAGTATCCGCCACTCCTGTTGGAGTATCCGCCGCCGCCACCACCACCATAGGACCGGTCACCTCCACCATAGCTTCTCTCTCCTCCACCATAGCCTCTATCTCCACCCCCATATGATCGGTCACCTCCGCCGTAGCCCCGGTCACCACCAAAGCTTCTGTCACCCCCATAGCTGCGGTCTCCACCATATCCTCCACCACCTGTGTAACAAATAAAAAGGTTATACagacgagaaaaaaaaaccttccatttaattaaaaaaaagaaaagtaaaccaCCAGCTTTGTCATGATAATTTCAAGCCGCCAATCCTTcttcaaatgcaaatgcagcCATCTGTTAACAATTTCATTCAAGTAAGAATACCGACCTCTACCTCTGCCTCCCCTGAAGAACCCCCTGCCGCCTCCAGAACCTCCTCTGAAACCACCGGACCGTCTACCAGATTTGCCAGCTTCATCAACACGAATCATGCGGCCATCAACAGACTTCCATTCATTGCAGCCATAGCATCCTTTGCATCCTCTGGATTTTCAAATGTCACAAAGCCAAAGCCTCTAGACCGGTCTGTCTCGCGGTCCCGGATTACATCaactgaagcaaaaaaaaaacaccatttaactcaaaaataaaagctgtgaAATAGTTTAAACCAACCTCAAACCCTCTGCTTAAAACAAACCTTTGGCAATTGATCCGTATTTGGAGAAAGCCTCCTCTAAGGACTGCTCTGTGGTATCATAGCTCAGACCACCAATGAAGAGCTTTCCCTCGTCAGACATGTTGAATCACGTGctgaaaaaaaacgtaataaaaatcaaatgttaGAAAAGGGTAACCAATTAAGCTAAAGAGGCCAAGTGAGGCCCGAAGAGACTAAAATTTATCGCGCGAAAACACGCGGGTTTTTTAGTGCGCAACAAGGAAACGCCATTTTCTACCCGTCTTCACAGCGTGCTGCAGCCATTTTGCCACAAAGACACGTTTTATCGCACAACCCCCCTTTGAACTCTACCTTCAGATCCTAAATTTAATATGGCGTGAAAGTTTACCATTAGCACGAAAAACCATTCGCAACTCTGTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247776.1 lncRNA upstream 111416 9923614 ~ 9963420 (+) False LOC122328159
TU223958 lncRNA upstream 177997 9896581 ~ 9896839 (+) True G151334
TU223956 lncRNA upstream 178536 9895441 ~ 9896300 (+) False mef2b
TU223957 lncRNA upstream 179509 9895046 ~ 9895327 (+) True G151333
TU223951 lncRNA upstream 181347 9888200 ~ 9893489 (+) True borcs8
TU223999 lncRNA downstream 2143 10081782 ~ 10082620 (+) True G151358
XR_006247731.1 lncRNA downstream 57661 10137300 ~ 10140154 (+) True LOC122327864
TU224002 lncRNA downstream 57806 10137445 ~ 10138202 (+) False LOC122327864
TU223986 lncRNA downstream 71841 10151480 ~ 10162446 (+) True G151345
TU224015 lncRNA downstream 105996 10185635 ~ 10187583 (+) True G151373
XM_043223411.1 mRNA upstream 1984 10070816 ~ 10072852 (+) True si:ch211-212d10.1
XM_043223410.1 mRNA upstream 30624 10030870 ~ 10044212 (+) True cilp2
XM_043222234.1 mRNA upstream 46362 9996479 ~ 10028474 (+) True yjefn3
XM_043223380.1 mRNA upstream 81395 9970622 ~ 9993441 (+) True gatad2ab
XM_043223381.1 mRNA upstream 81395 9972170 ~ 9993441 (+) False gatad2ab
XM_043223124.1 mRNA downstream 109575 10189214 ~ 10208785 (+) True cbarpb
XM_043223395.1 mRNA downstream 143951 10223590 ~ 10231309 (+) True fstl3
XM_043223041.1 mRNA downstream 159438 10239077 ~ 10249861 (+) False bsg
XM_043223040.1 mRNA downstream 159439 10239078 ~ 10249861 (+) True bsg
XM_043223042.1 mRNA downstream 159445 10239084 ~ 10249861 (+) False bsg
XR_006247720.1 other upstream 81395 9970622 ~ 9993441 (+) False gatad2ab
TU223980 other upstream 111202 9923547 ~ 9963634 (+) False LOC122328159
TU223981 other upstream 111202 9928679 ~ 9963634 (+) True LOC122328159
TU223982 other upstream 111202 9931139 ~ 9963634 (+) False LOC122328159
TU223952 other upstream 181347 9888200 ~ 9893489 (+) False borcs8
XR_006247780.1 other downstream 629405 10709044 ~ 10709110 (+) True LOC122328232
TU224353 other downstream 726413 10806052 ~ 10837365 (+) True G151620
TU224351 other downstream 736496 10816135 ~ 10837365 (+) False G151620
TU224458 other downstream 839421 10919060 ~ 10921928 (+) False si:dkey-172o19.2
XR_006247707.1 other downstream 1239050 11318689 ~ 11323940 (+) False mier2

Expression Profile