RNA id: TU224138


Basic Information

Item Value
RNA id TU224138
length 2337
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G151468
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 10189830 ~ 10194857 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tactatGACTTCTAtaacttatataaatataggttgcaccacatgacatttctaAGGGACAAAGAACAAAGTGGGAAATTCtaagattaaatattattaaaatgtctaaaataaataaataaaacaccttATTGGTTGACAGAAATGTTCATCCAGAACCAATTATGTTCAGGGGACTGTGAATGTATATGCTGTGAGAGATTGGTCTTACCAGGCATGGCGTCTGTCCCCTTCACAACAACGGCGACAGACAATCAGAAGGACAGAGAGCAGGACGAGTGTCCCCCCGACAAAGATGGACAAGAGGACCAGCAGGAGGACATAGCCATTCTGTGTCCCTGATGACAGCGGGACGTCCTGGAGAAACACGGTGGTGTAAGTTCTGTTCTGGTTTGTCCATATGGCAGACTCATTGCTCATGGTCCAGGCCAGAGAGAGCGTCCCCCCTGAGGAAGACATTACAGGAAGTCAGGCGGCTGCTTTGAAGCCGGTTATGGCACTAAAGGAGGATTTGAATTCTCCTTCACCAGGAACATAAAGCAAACGCATCCCTGAAGTTTCCTTTGAATGACTGTGAGATACTCAGCTTTTGAGGCAAAATATAGCTCCGGATACGTTTGCATGCAACTCttgtacaaacacaaacacgcttATGCAATCCCTTCTCCCCCCtccccaaaacaaaaaaatcccttttcatttcctcttttaTTCGGTGGCTGAGGCCCGGCAGCATACGCTCTCCTTAAAAACCGCCAACGCCACAGCTTTCTGCATAAACCGcgaaaaaaaacccctgctCTCTCACTCCTGCACTCACCTCCCAAGCACTCCTCGTTTCTTTAACGCAGCGATGCTGCCTTTCCTCCCATTATCTGAAGGCAGAGTGCGTTCGTGTGCATTAGATGCAGAGATAGCGGCGTGTTTGAAGGCTCGGACCGCAAAGCTTTAGGCTCCTGCTGCATACTCATCCAGCTTCTGCCCACCTACCTGTTTTCatagcttctctctctctctttctccatctcaGGGTCTTTAGCATTCCTGAGATCatttaagcttgttttttttttgcatctcgGATGCATGTAGCGTCTAATGTGCCGCGTTATTAGAAACAGATATTAAACAAATCAACAGAGACCCATATGAAACGTTCCGGACTGCTCTTTCGGATTTATTGGCGTTGCCAGATTtcctttttaattactttttgtcaCTTTCAATCCACCTGTGGTCTGTTCGGTTTGCCCCAATTCTGTTGGTAAAGACATATTTCGCTTTGCGAGACACTGCATAAAAGTGAAAACGTACAAAACGcctgtttaaaaatgacctttgtTTGTGCAGTTTAAGTTGTCAGGTCGATTCGGTtgagcttaaataaaaatagtttgcGTTACTACATTATAGGTTACCTGAAAAAACATGCTTTGCGATCAACAAGCTACCGTGAACGTTATGCAACATATGCTCTTGTCATGCCTGTCAGACTCTGTGGAGGTGTATCACATTCAAAAATCTCTccgtaagcattttttttaaaacattgtttacatttCAGCGTTAGTTTCTACATCTTCGTGTTTAATTCATGTTAATACGCTACCCTTTTCATCATTACTACTGATCATCCATTGAGTTCTGTTAGATAAAGGATAAGCAACAGTGATAAGGAAATAGTCTGTTGCTACTGgcaacaaatataattttatatctgTTGGAGAAATGTACtaaatttgttcaaatatatcatttaatcaGACAAGTTCTCGAAAACTTAATCAAATTGTTGCTGAAGAattgttacatatttattaatattaatatttatttattatacttaacttaactaatactaaataaaattgtatcttaaaataaaatacattctatctgacctaaaataaattataataaaaaaatccctaaactcatttaatttttatccaGTTGCCGAAGCtacattttccttttcatttttatgcagtttatgttcagaaatgactaaaacaaaccaaatagacaataaaaaattaaactgataacaattacaaaaacacaatgtCTAGAGctacaaactaaaaacaattaaagcagaatttaactaaaaactaactaataaaaactaataaaaactaacatttttattaaatttattatatctcaatgatactaaaataacactggtaactaaaaaaaaaagttacagtcCATCGGTTTTCCTAGTAGGCTATTAACTAAATACTTTTTAGATAGTAATactcttttaaatgaacattttaactGCACCGGCAATATTTCATCTATAACGCTAAACTAAATAACATGCACGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224106 lncRNA downstream 116938 10053918 ~ 10072892 (-) True G151439
TU224111 lncRNA downstream 161391 10023218 ~ 10028439 (-) True G151444
TU224082 lncRNA downstream 206683 9963097 ~ 9983147 (-) False G151425
XR_006247729.1 lncRNA downstream 323942 9819693 ~ 9865888 (-) True LOC122327858
TU223934 lncRNA downstream 568665 9616790 ~ 9621165 (-) True G151319
TU224127 lncRNA upstream 50061 10244918 ~ 10249842 (-) True G151457
TU224186 lncRNA upstream 180316 10375173 ~ 10375615 (-) True G151507
TU224187 lncRNA upstream 180784 10375641 ~ 10375960 (-) True G151508
TU224252 lncRNA upstream 247630 10442487 ~ 10442738 (-) True G151569
TU224270 lncRNA upstream 260514 10455371 ~ 10455631 (-) True G151572
XM_043223518.1 mRNA downstream 2243 10183038 ~ 10187587 (-) True atp5f1d
XM_043223516.1 mRNA downstream 16513 10151462 ~ 10173317 (-) False midn
XM_043223515.1 mRNA downstream 16514 10151462 ~ 10173316 (-) True midn
XM_043222485.1 mRNA downstream 109733 10075963 ~ 10080097 (-) False cirbpb
XM_043222483.1 mRNA downstream 109734 10075032 ~ 10080096 (-) False cirbpb
XM_043223055.1 mRNA upstream 87165 10282022 ~ 10321663 (-) True polrmt
XM_043223900.1 mRNA upstream 199155 10394012 ~ 10396169 (-) True LOC122328192
XM_043223507.1 mRNA upstream 225653 10420510 ~ 10422354 (-) False micos13
XM_043223306.1 mRNA upstream 272270 10467127 ~ 11650822 (-) False LOC122327734
XM_043223305.1 mRNA upstream 272270 10467127 ~ 11650822 (-) False LOC122327734
TU224081 other downstream 226204 9957811 ~ 9963626 (-) True G151425
TU223881 other downstream 686824 9498680 ~ 9503006 (-) False gpx4a
TU223882 other downstream 688148 9498680 ~ 9501682 (-) True gpx4a
XR_006247698.1 other downstream 1047971 9013553 ~ 9141859 (-) False nfia
XR_006247701.1 other upstream 91721 10286578 ~ 10321663 (-) False polrmt
TU224207 other upstream 224270 10419127 ~ 10422335 (-) True micos13
XR_006247709.1 other upstream 979286 11174143 ~ 11188678 (-) False rex1bd
XR_006247708.1 other upstream 984847 11179704 ~ 11188678 (-) False rex1bd
unassigned_transcript_2544 other upstream 1153523 11348380 ~ 11348451 (-) True trnaq-uug_21

Expression Profile