RNA id: TU224309


Basic Information

Item Value
RNA id TU224309
length 1184
lncRNA type inter_gene
GC content 0.43
exon number 6
gene id LOC122327757
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 10701622 ~ 10709755 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCGTCCCAAAGAGACGGGCGGTATAAGTCTGACTTCGCCGTTAAAACGAATCCAAAAACATCGGGCAAAATGGTGAACTTCACAGTGGACCAGATCCGTGCCATCAGGGCCAGGCAGTCAAATATGTGTAATATTGCACACGTTGATCACGGCGAGTCCACTTCGACAGACTTTCTGGTGTCAGAAGCTGGTATCATTCCCTCAGTCCATGCTGGAGAAAGGAAGGCTGAGCAATCCACGAGGATGTGTCTAGACGGAGGCTGTGCTCAGACAGGCCACTGGTGAGAGAATAAAGCCAGTATTAATTAACAAGATGGCTCACGCATTGATGGAGCTGCAGCTGAGCCCAGAAGAGCTGTACCAGATTTTTGCTGCGCATTGAGAATGAATCTATGGGCAACATTATGGCGTTGGTACTGTTGGCTTTGGACTGCATGGTTGAGCTCTGAAGTGGAGATGTATGTGGTGACGCTCAGCTGAGCAGTGCAAGTTGAAGATGTGATGAAGCTTCGGGGGAGACTGGTACTTTGACCCTCTTTGTGGCAAGTTTAGCCAGTGTCCCACTTCACCAGATGGTGAATAACTTACTAGGACTTCTGCCCAACTGATCCTAGACCTTATCTTTTAAAGTATTTGAACTTTGAACGTTTGAGGAAGAAACTAAGCTGACTGAGACGCTGGACATCAAATTAGATTCTGAGGACAGGGGGCCCTGCTTGAAGTCTGTGTCGTTGCCAGAAGGAGAAGCTCTGCTTCAGATGATCACCATCCACCTGCCCTCAGTTTACTATTCAGAAGTACTGCTGTGAGCTGCTTTTTAAAGGACCTGGAGATGATGCTGCCATGGGTATGTTGTAGCTATCggaacatttgatttaaaagtgGTATATGTCCTGGGGTGTTTAACATACTTGGTACCACTATTTAGACCGGTCACACCTTTGCCATTTTAAAGGAcggtcttttgtttttgtttttccccttttaGGCAGTTTTTCTAGCCTTTATTGTATgtcatgttttgtcatttgctcgtgtattaataaagcaataattgTTAGAAAACTTGCTATTGTGAtttttgaaattaatgttttgttaaaactgagttaactataataattttcacaatttaTGTATATTCTGTGCTTGCTGTAATAAATGTGATCAATCTACctccaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224310 lncRNA upstream 5071 10701622 ~ 10702328 (+) False LOC122327757
TU224294 lncRNA upstream 38187 10666056 ~ 10669212 (+) True G151592
TU224196 lncRNA upstream 286363 10388550 ~ 10421036 (+) True G151516
TU224164 lncRNA upstream 358513 10347829 ~ 10348886 (+) True G151487
TU224024 lncRNA upstream 518227 10188578 ~ 10189172 (+) True G151382
TU224316 lncRNA downstream 758 10710513 ~ 10711972 (+) True G151603
TU224372 lncRNA downstream 67972 10777727 ~ 10840314 (+) True G151624
TU224374 lncRNA downstream 70123 10779878 ~ 10787611 (+) False G151624
TU224394 lncRNA downstream 121103 10830858 ~ 10831344 (+) True G151642
TU224444 lncRNA downstream 180223 10889978 ~ 10892023 (+) False onecut3a
XM_043223909.1 mRNA upstream 244202 10457205 ~ 10463197 (+) True rgmd
XM_043222316.1 mRNA upstream 281092 10422888 ~ 10426307 (+) True hsd11b1la
XM_043223903.1 mRNA upstream 289183 10413349 ~ 10418216 (+) True LOC122328195
XM_043223901.1 mRNA upstream 294945 10410257 ~ 10412454 (+) True LOC122328194
XM_043223451.1 mRNA upstream 298916 10407145 ~ 10408483 (+) True LOC122327820
XM_043223318.1 mRNA downstream 6485 10716240 ~ 10720317 (+) True hmg20b
XM_043223231.1 mRNA downstream 11345 10721100 ~ 10759871 (+) True unc13a
XM_043223234.1 mRNA downstream 11345 10721100 ~ 10759871 (+) False unc13a
XM_043223232.1 mRNA downstream 11345 10721100 ~ 10759871 (+) False unc13a
XM_043223235.1 mRNA downstream 11345 10721100 ~ 10759871 (+) False unc13a
XR_006247720.1 other upstream 713958 9970622 ~ 9993441 (+) False gatad2ab
TU223980 other upstream 743765 9923547 ~ 9963634 (+) False LOC122328159
TU223981 other upstream 743765 9928679 ~ 9963634 (+) True LOC122328159
TU223982 other upstream 743765 9931139 ~ 9963634 (+) False LOC122328159
TU223952 other upstream 813910 9888200 ~ 9893489 (+) False borcs8
TU224353 other downstream 96297 10806052 ~ 10837365 (+) True G151620
TU224351 other downstream 106380 10816135 ~ 10837365 (+) False G151620
TU224458 other downstream 209305 10919060 ~ 10921928 (+) False si:dkey-172o19.2
XR_006247707.1 other downstream 608934 11318689 ~ 11323940 (+) False mier2
TU224828 other downstream 1113179 11822934 ~ 11824055 (+) False LOC122327289

Expression Profile