RNA id: TU224374


Basic Information

Item Value
RNA id TU224374
length 3560
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G151624
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 10777727 ~ 10840314 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGTCTGGCTATTGTTGTCATATCGGGGTCTCTGTCTGGTCTTGTTCAGTTTGCTCATGAGCATCTTGCCTGTGCGGAAATCAAAGGAGCTTAGATCCATGGAGTTGCCAAGGTAACGGGCCAATTGAGGCTTGCTCCGGAACTTCTTCCCAGTGGGGCTGGCGAGGGAGCAAAATAGGACACATCTCAGAGATTTGATAATCCCGTACGAATGCCCGTTTGGAAAGAGAATGGGTTATGGTGACGGCAGCTGCGTACGGATATTAAACACACAATATACGCAAACAATGACATGCAGTGGCTAACTAGGAAAGAAGTTGGATCAAGCCCAAGCACTGTGATGACGAAATGACAATGTTATTAGACCGTGAATATTTTGAGGACTGCCTCTTAAACACTGACATTTATGACAGCATTAAAATCCCATTCAAAATGGGATTTTGATGCTTAAAACACGCATGAATTGGTATGAATGCCAATacctctttgtttttcttcatttaatataaaataaagcttaatCATTTGAATTGGAGTTTTGCATGTTTGAGCTAAGAGCAGTACGTgcgccaaacacacacaaaaaaaagaaatcttgaTCTATTCTCACTTTTACTCACACGAAGGTCTTGGGTTTTCAAACACTTGCACTAGACGACCCTAATAAACTCTTGTAAGCTGCTCTTGTCAATCTCCTCTGCCAAGTGTTTACATTTGTTTCGCATGCTTTGAGACAGCAGCAACACCGTTTGTCTAGATCTCAGCTGGCGCTCTGCACTAAGCAGTCGCGCTTCTGCTTCTGTAACAAAACCCAAAGTCCTTTAAATCGCAATCCTCTGTTAAAAAAGTTAGCTGACACGGGGGTGTGATGCGGAGATGAGTTCACTGAATACTCTGCATGATGATACCATGAAAGTTCACGTGCTTGTTTCAAGTTCATGCACAACTCCggacaaacttttttttggttttagtcGATGGCTCTTCAAGCTTGTCGAGGCGTGCAAACATGTAACAtagatggtttttttttaaattgattaagTAATACGATACCACAGACTATACAAACGACCTGCCTCCCCCCTCTCTCGCCTCtgttcttcctcttcttcctcacctctgctaaaaaaagaacagtCACGTCTATTTATGACATGTTGTTGACTGGGAATCCTCGGAAAATAGGTTCATGAGGCATGTTGATAATGCACATAGATGCAAACAAATCGTTTTTGGTTCTAAACGTGTCGTAAATGGTGTAAAAAGTAGCCGTTTTGCATAAAAACTGTGAATTTTAAACAAGTGCATTACTAGAAGATTTTTGAGACGATATGTTAAATTAACCAACCGAACAGAGATCCCCAATGAATCATTTCAATCGGTTCTTTTGAATGGTTCTGTAGAAACAGCTCTGTTAGGTTGGAGGATCATAAACAGTGCTAATTACCTCAAACCGGTTTGAAAATGAAtcaggcaaaataaaaaacaaaaaaaaaaaaaaaacaaattccaaCCTAGCCGAGCCAAAGATGACAGGAACAAGAAATCCTAAAATTGCCAAAAAGGTGCACACACACGGCATAATAATGAGGATGAAAGACTACAAAGCTTCTAAATTGCAGATTAAATACTACACAGATGCTtccagaaagaaaaaacaaaaccaaaaaagacGGATGAGACATTTTTGCATTtcgaaataataaaacaaatggtcGAGTTTACAATGAAAGTAAGTTTAGGCACTGACAAGGCATCACTCTCAAAAATGACAGTCTTGAGAATAAGAAGGCCACGATATATAAATGttcaacaacttttttttttttcttttttttaatcatctttatCAAGAATTGATATTATGCTTCCATTATACTTTAGGACAACCTAAGTTCAGTATCCCCCTTACGGTGAAATGTTATTACTCAGAAATCATATCCATTGTGGACACTGCGAAAATTACACAGGTTataacaccatttttttttcctctcctacATATGTAATTCAAATCATCCGGGAACATTATCTCACGCACATGACGAAAAATGGGTAGAGACGTACACCTTGAAATGACGATATGAATCAACTAAACTCACAGTAAGCCAGTCTGACGGAGACGTGAGTGTGTACATTTGAATATTACATTCAAACAGGTTGCATTATGTGCATTGGCGAGACTGAAATGATGGCGAACGCTGCTTACGCACTACACCATTGCCTAAGAACACTTCTAGTGATGTACAGTTCCCTGAAATCAGGAAACTAGCGCGAACCTCGATGTGCCCTCGACCATCACCATCAACTCTCTTTATCGTTTCTTCATTAGCGTAGAGCCATCAGGGGGCGTCTGGGATAGAAATGAAGCGTGGGTCGCCTCGCCCAAACCTAGCGTTTCTGAAAATATACGCAGGGTTTTTCTCGAAATCGCACGACTGAGTGTTCACTTGCGCTATAGACTCTACACTTCAAactaatatgtttttgttatttagaaaTCTACAATGTATAgactaacaaaaatatatatatatttatatatattcttacattttattccTCAAATCGAAATAATATCCGTTACATATGCGTGAGGTGGACATGTGTACGCTTTCAGACTTTTGGCAACAATGAGCGAGTGAGTGATGATCGAACGTATTCTGGcggggaggggaaaaaaaaaataaaaattaaaaaggaaagaagTGAAAGGTCAACTTGGCAATTTTGTGCTTGGGGACGCAATGGAATCCAAGCGTTGTTGTCATAGTAACAGAAGCTCACGCTCCTTTATGATGCGCTTTCTTCCGATTGGCTGAACTAGTCAATGGCATCGTGAGAGCTGATGACGCGTGATGTTTCCAAAAGAGATGAAACAGTCTGGAGAGCTGCGATGGGCCCGTGTGCTTTTCTCTCGTTCCGAAAGAGCCCTGGCCCATAGAGCAGAGGCATGCTGGGATACTCCGTTCTGAAAAGCACCACAGGTGCCCCGCTTCTCATGGGGTTTGGTTACACAACGCACGTAAGACTGTACCTTTCAGTAGGGAATGACAaaccacatgaaaaaaaaaaaaaaaaaagaaagaaaaattgcTCATATACAAGCAActcccaaactttttttttttttgttgcacacAAGCAGTTTGCGTCTTATAGAAAACGTAACAATTAGGCACAAATCCATGATTAAATTGACGTCTGTCTCGTCTGTCGATTGATACTCTCTTTctgcagtggaaaaaaaaacaaacgtcaGTTGTGGTCAGAACTTGTCCATGTCTATGATCCATTGTAAGGAagcagaaaaatacaaaatgactTGAGAAAGAGTTCTTCACATTTGTGCTGGTAATTGCGGTCTGGAGTGATCACGGACAAAATCTGCTGTGTCAGTTTTGGCGGGTCGGTTCGTGTGTCCGAAAAAGTTTTGGAGGGTGCATCTCTGATTTCATGGATGATATGCTTTCCGAGTCACTATATGCACACAGAGAGGATGAGAACGGTGGAAGAGATTCAAGGTCACTTCTTCCAGGAGCCCCAAGAAAGTTCACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224316 lncRNA upstream 67906 10710513 ~ 10711972 (+) True G151603
TU224309 lncRNA upstream 70123 10707399 ~ 10709755 (+) False LOC122327757
XR_006247710.1 lncRNA upstream 70130 10701873 ~ 10709748 (+) True LOC122327757
TU224310 lncRNA upstream 77550 10701622 ~ 10702328 (+) False LOC122327757
TU224294 lncRNA upstream 110666 10666056 ~ 10669212 (+) True G151592
TU224394 lncRNA downstream 43247 10830858 ~ 10831344 (+) True G151642
TU224444 lncRNA downstream 102367 10889978 ~ 10892023 (+) False onecut3a
TU224464 lncRNA downstream 145052 10932663 ~ 10932995 (+) True G151703
TU224469 lncRNA downstream 147424 10935035 ~ 10993028 (+) False peak3
TU224470 lncRNA downstream 147424 10935035 ~ 10994944 (+) False peak3
XM_043223239.1 mRNA upstream 20007 10721101 ~ 10759871 (+) False unc13a
XM_043223328.1 mRNA downstream 68204 10855815 ~ 10857119 (+) True foxq2
XM_043223288.1 mRNA downstream 86817 10874428 ~ 10890192 (+) True onecut3a
XM_043223333.1 mRNA downstream 130478 10918089 ~ 10922031 (+) False si:dkey-172o19.2
XM_043223334.1 mRNA downstream 130962 10918573 ~ 10922031 (+) True si:dkey-172o19.2
XM_043223326.1 mRNA downstream 136137 10923748 ~ 10930951 (+) True nfil3-4
XR_006247780.1 other upstream 70768 10709044 ~ 10709110 (+) True LOC122328232
XR_006247720.1 other upstream 786437 9970622 ~ 9993441 (+) False gatad2ab
TU223980 other upstream 816244 9923547 ~ 9963634 (+) False LOC122328159
TU224353 other downstream 18441 10806052 ~ 10837365 (+) True G151620
TU224351 other downstream 28524 10816135 ~ 10837365 (+) False G151620
TU224458 other downstream 131449 10919060 ~ 10921928 (+) False si:dkey-172o19.2
XR_006247707.1 other downstream 531078 11318689 ~ 11323940 (+) False mier2
TU224828 other downstream 1035323 11822934 ~ 11824055 (+) False LOC122327289

Expression Profile