RNA id: XM_043223334.1


Basic Information

Item Value
RNA id XM_043223334.1
length 2742
RNA type mRNA
GC content 0.45
exon number 2
gene id si:dkey-172o19.2
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 10918089 ~ 10922031 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTCTTCGCAACCACCGCCACCCAAAGCCTGAGATATGCTCCAGCACCCGTTGAACAGCacccgatttttttttttcaagcgaACAATACATGACCCATTTTTTATCTTGAAAACACAGCTTTAAAATGTCAAGCGTGGCTAATTCTTCAAGTTTTGTAACCGAAGGTGATGCACAGCATTACATGAGATGACTTTGCGCTATGCATTTAATAGTGAAGATTTTCGcttattttttacttgtttgttgTAGCCGGTGGAACTTCAATGAGTTTGTATAAGCCTGTAGTGCAAGCTACAGACCTGCATTATGCTTCACATGCAACGACACAGATTTAGTCATAATCTAGAACACGAAAACAATTTCTGAGGAAATTTGGAAGGGCAGTCCCAGATACGCAAACTCTGCAaaactgaatgattttttttcatgcatgtcaTTCTTAGTaatctattcttttttttacccaCAATTGAGATCTTGTTTTACGTGATCTTAACCATCTTCAGCTTCAGCTTCTGCTAGAGCACTTTCTTATGATAGAGCACTTTCTGAATAATTCGGTTTACTAGGAAATGATGAACGAATACGTTAAATTGCGCCGTTTGCATTTTAGACATTATTATCAAAGTGGTGTACAATTTACAGAAGAATGCAATAAACGATACTAGCATGCGCTGTTTGAATTGTGGGCGAAATAACCTCAATGTGAACATACAACAACATTGATGGGCCTCGGTGCTGTATGTATGGCCAATCGCATTAATGCGCTAGCTATGGTTGAAGTGTGGGATTGTTACTTCACAGGGCATCCatgagaattaaaaataaatgtataaataaaatgtactttcacAAAGgtgaaaacaaaacaccaaGGTGCTGAGTGCgccagaaaaaaattattttattcattcttttcaagtagaacaaacaaaaaagtgagTCATAACTCAAACCACTGGTTTGAGATACTTGTTTGCAAGTCTCCGCCTCCATATCTAAGGAAGGAAGATGTGGTCCTCACCTACTACAGCTCCGTTTCATGCAATAGGCATATGTGCAGATTACATGTGCCACCCTGACTGCCATTGGTTGACAGAGTTTGTCTGCATGTTTCCACCCGAAGAGTTTTAGTTTTAAGCCGATATCCTTTAATTCATCGTTACTTTCTAGCATCATTCGTGTGACAGCGCTGTAAGAACAATGAGTACTATGAGAAGTCCCGAGCACCTAGCAGATACTTGTCTTCCCTCCTCCTCGGGTGAGAGCAAAGATGACCCTGGAGGTCTAAGAAGGCTCCTGCCCCTCACCAGCTCATCAGTACTGGCACGACGACTGTTTCACCTCCAGCCATACCGCAACCCACTCCTGCCCAACAGACGACGCAAACGCGAGATGATGCCAGCTGAGAAAAAGGACGCATCCTATTGGGTGAAGCGGAAGAAGAACAACGAGGCCGCCAAGCGCTCTAGAGAGAAGCGACGACTCAACGACTTCATGCTGGAGGGGCAACTTATGGCACTGAGCGAGGAGAACGCCCAGCTCCGGGCCGAGGTGCTGAGTTTGCAGTATCACATGGGAGTTGGGCGAGGTCTGGATGTCAGTCATCCCATAGTCCCCTCCCCTATCCATCTGCGTCCCATCTCAAGCCTTCCCTGTGGGGTAACGCTCCAGAAGCTCTAGAGCTGTACCACTCTTGGAACGGCTCGTCTCCGTTCATCTCGCCCCTGAGGGTGCCTCATAAAAGTGCCAGCCTAGCTACACAGATTAGCCACTTGGACAACAGTGCTGACCCAGTAGAGGCAGACACAGCGTCTCACCCACAGGTCTCTTCCAGCAACGACCCACCAAGCCACCCACAACAGTTTCCTGCCCAGAGAGCATCACCGCCCCCTCCTCAGCTGCTACCTGGGTTGAGCCAGTCCACCACCCAACACAGCAACCATATGCTGCCTTGGGGCTCGCCGTCTTTGCGACCATCTCCCCTTCATCCCAACTGGCCGCTGTCCTTTCCTTTGTCGCTGCGAGACACAGACGAATCTCGTAACGGTGTAAGGTCCCTGTGGAACTTCAACAGCAGGTACAGCATGCTATCCGCTGAGATCTCAGGACAACTGAGGAGGATCTTTTGCTCCGAGAACTCTTAATCAGCAATAACGCTGCCTGAACAGTATTTCATTGATAATCCCTCttgaaaaaaagcagcatatgctggttaggtaggTAGCTGGGATATAGGTTTAAGCTGGTTCATGCTGGTTCtaagctggtttatgctggtcacAAGCTGGCAAAGGACCAGAATAAACCTcataaaccagcatcccaggtTCAAAtaatacctaaccagcatatgctttTTTTCAGCAGTCACAACCTGCTAAAAAGGCATTGTTCAACAAAAACTAATTGTAGATTTACGTCTGTTGTTCCGAACATCTGTATAGggcacaaacattttaaaaaatgtctttgtgctttttgtccatacagtgaGAGTCACTGGGGTGTAGTGTTGCTTTTAGACCCCATTGGCTTTCATTATGTGTCGAAATATCTTCCACTgaagaaggaaagagaaagatatgggtgaactatttctttgaGGTATTAGCTGTGCTTAATGTAGTGAAGTGCAAGCCAGTCTCTTCATACGGCCTAGCAAATGATAGACTTGGATACAATCGAAATGTTTATTCTGCAAAAATGTGGCCACTTGTAATAAAAAAGTAGTTAATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224444 lncRNA upstream 26550 10889978 ~ 10892023 (+) False onecut3a
TU224372 lncRNA upstream 78259 10777727 ~ 10840314 (+) True G151624
TU224394 lncRNA upstream 87229 10830858 ~ 10831344 (+) True G151642
TU224374 lncRNA upstream 130962 10779878 ~ 10787611 (+) False G151624
TU224316 lncRNA upstream 206601 10710513 ~ 10711972 (+) True G151603
TU224464 lncRNA downstream 10632 10932663 ~ 10932995 (+) True G151703
TU224469 lncRNA downstream 13004 10935035 ~ 10993028 (+) False peak3
TU224470 lncRNA downstream 13004 10935035 ~ 10994944 (+) False peak3
TU224471 lncRNA downstream 50991 10973022 ~ 10993028 (+) False peak3
TU224524 lncRNA downstream 153865 11075896 ~ 11077069 (+) True G151738
XM_043223288.1 mRNA upstream 28381 10874428 ~ 10890192 (+) True onecut3a
XM_043223328.1 mRNA upstream 61454 10855815 ~ 10857119 (+) True foxq2
XM_043223238.1 mRNA upstream 158702 10721102 ~ 10759871 (+) False unc13a
XM_043223326.1 mRNA downstream 1717 10923748 ~ 10930951 (+) True nfil3-4
XM_043223277.1 mRNA downstream 65805 10987836 ~ 10992104 (+) True peak3
XM_043223286.1 mRNA downstream 254477 11176508 ~ 11185087 (+) True crlf1b
XM_043223287.1 mRNA downstream 254479 11176510 ~ 11185087 (+) False crlf1b
XM_043223230.1 mRNA downstream 267821 11189852 ~ 11225519 (+) True cpamd8
TU224353 other upstream 81208 10806052 ~ 10837365 (+) True G151620
TU224351 other upstream 81208 10816135 ~ 10837365 (+) False G151620
XR_006247780.1 other upstream 209463 10709044 ~ 10709110 (+) True LOC122328232
XR_006247720.1 other upstream 925132 9970622 ~ 9993441 (+) False gatad2ab
TU223982 other upstream 954939 9931139 ~ 9963634 (+) False LOC122328159
XR_006247707.1 other downstream 396658 11318689 ~ 11323940 (+) False mier2
TU224828 other downstream 900903 11822934 ~ 11824055 (+) False LOC122327289
TU224831 other downstream 905313 11827344 ~ 11833374 (+) False LOC122327134
TU224905 other downstream 1088438 12010469 ~ 12268139 (+) True LOC122327127
TU224911 other downstream 1126387 12048418 ~ 12263031 (+) False LOC122327127

Expression Profile