RNA id: TU224470


Basic Information

Item Value
RNA id TU224470
length 1993
lncRNA type sense_over
GC content 0.40
exon number 4
gene id peak3
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 10935035 ~ 10994944 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTAATAACAGCCTTGATTCATCATCaatcacacattttatttcagtttgagtCACTTCTTGCTGGTTTGACGCAGTGACATCATAGGTGAGCAAAGGCACAAAATTATAGCATGGAGATGAATATTCCACACAGCAACACAATTTGTAGGCGCAACAATGATTCAGTACTTCCATTACAAATCAATCAACAACGTGCCGTGCATATTAAATATGGGAAAGCCGAAGGAAAAGACTTCATCTTTAAATACATTATCTGGCTTTGTACAAAGTGCTAATCTCTATAACGggtaaatgcatattaatattgcattgaTAGAGACCGTGTATCTTTGGTGTGAAACTGAAACACAGCACTTCTCTTTTGCAGTTTATTCATAGACTGtttagtacaaaataaataaatacctggCCACAGGCGATTAAATCTATAACATCAAAAAGACGTCAAAACCACTCTCATTTTGTATTACGTTAACCcttgtttttttgcttgcatGTAAATTAGACGGTTGTTTTGGGAAAATGCTGCACTTACCTGTGCGATATTGTTAATAGGTCAAAAGGtcatctatttaaatattttacttttgttttgaatagctttttttttttttttttttaaTGGTATAAGGTGAGCATTTTTATTCTGCACACTGTCAAACATGCAGACAGATCCTATTGAAGTCATAACTAAAAACTTCAATTCATGCACACATTAAGAAAACAACTTGAAGACActggtaaaaagaaaaaacatcagcaATGAAATCCATGATTCTACAAACATTGAGGGATTTTAACCATAAATATTATGCACTTAAAAGGATCAGTGTGGGAATGGGTGAAGGGGAATCAGCAAAGAATCCAATTACATTGGAAGGTAAGCCTAGTGGTAATGGCTTAAAAAAAGCGAATGGTCACTGTGGAAAATTTGGTTTACACTAGTGCAAATATGACaggagaggaaaaaacaaaaacaaaaagcacaaccCTTACAAGAACTACAGCGTAGTAATtaacaggaaaaacaaaactattcaaAATTTGACATTCATACTAGGTTTCTTTTAATGGTGACCATGTTGAGTGAGATACAGCATGACAATTAGAAGCAAGATGTGATTGATAAGCTTTATTCGTCACTATCGGAGTCTCTTTCGATGCTGTAAGCCATGAAGAAAGCGTCGGGGCGGGTTGGGACGAGGGGATGACCCGGTCTCACAATCTCAAAGCCCATGAAACTGAACGTCCGCAGCAGCGATGCTGGTGACGGGAGAGCAGAAGGAAGTTAATATGTGGTTAACTAAATGGGGTTAGAGAACACAGAAAGAGCCTCACCTCTGTCATCCCGGCTCTTATGGAAGCAGATGAAAACGTGATCAACCTGTAACTTCTCCTCTGCAAACTCCAgcaaaagtgaaaaactgttaaaaaaacgagaattttttttaagccacaACCATTTCTGtagggagaaaaagaaaaatgaagaaacaaatcaatTTGACTAACCTATCTTTGCTCCCTTCTGGGAGGACACCGGTGGGGATTTCGATGTAAAGGTTTGCCCCCTTCAGTGCTCCCCTCCAGACTAAGTGCTTGCTCACAGAGCAGCGTCGCTCGAAGAGCAAAAAACGTACACGGCTGTTCAACTGAGGGGCTTCCTCAAGAACCAGTAACTGAGCATCAATAGAATAGCTTAGCTGAAAGACTGTGATCCCGCTGATCATTCCCTCGCCCACCTGGGATCTTCAGGGGTGGGAGAGGGACATCAGGAACACCACAGAGGCCCCGGACACGGGTTACTGCAGCGATGGGAACTCACTCTCGGGTTTATTACGGGTCACTTCGATAACTGGCATCTTGGATATAttactctctttttctctgacAAAACAGTGGCTATTCAGGATCGTCTGGAGGTTGGATTTAACCATCCGGCCAACGTCAAGGCCCTATTCTTCTCTGTCCGTGCGCCGACTGAAAGTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224464 lncRNA upstream 2040 10932663 ~ 10932995 (+) True G151703
TU224444 lncRNA upstream 43012 10889978 ~ 10892023 (+) False onecut3a
TU224372 lncRNA upstream 94721 10777727 ~ 10840314 (+) True G151624
TU224524 lncRNA downstream 80952 11075896 ~ 11077069 (+) True G151738
TU224475 lncRNA downstream 133582 11128526 ~ 11164328 (+) True G151707
XR_006247711.1 lncRNA downstream 133962 11128906 ~ 11140378 (+) True LOC122327758
TU224539 lncRNA downstream 187897 11182841 ~ 11183080 (+) True G151750
TU224634 lncRNA downstream 301964 11296908 ~ 11297153 (+) True G151815
XM_043223326.1 mRNA upstream 4084 10923748 ~ 10930951 (+) True nfil3-4
XM_043223333.1 mRNA upstream 13004 10918089 ~ 10922031 (+) False si:dkey-172o19.2
XM_043223334.1 mRNA upstream 13004 10918573 ~ 10922031 (+) True si:dkey-172o19.2
XM_043223288.1 mRNA upstream 44843 10874428 ~ 10890192 (+) True onecut3a
XM_043223328.1 mRNA upstream 77916 10855815 ~ 10857119 (+) True foxq2
XM_043223286.1 mRNA downstream 181564 11176508 ~ 11185087 (+) True crlf1b
XM_043223287.1 mRNA downstream 181566 11176510 ~ 11185087 (+) False crlf1b
XM_043223230.1 mRNA downstream 194908 11189852 ~ 11225519 (+) True cpamd8
XM_043223327.1 mRNA downstream 231216 11226160 ~ 11229779 (+) True odf3l2b
XM_043223260.1 mRNA downstream 237791 11232735 ~ 11249556 (+) True shc2
TU224458 other upstream 13107 10919060 ~ 10921928 (+) False si:dkey-172o19.2
TU224353 other upstream 97670 10806052 ~ 10837365 (+) True G151620
TU224351 other upstream 97670 10816135 ~ 10837365 (+) False G151620
XR_006247780.1 other upstream 225925 10709044 ~ 10709110 (+) True LOC122328232
XR_006247720.1 other upstream 941594 9970622 ~ 9993441 (+) False gatad2ab
XR_006247707.1 other downstream 323745 11318689 ~ 11323940 (+) False mier2
TU224828 other downstream 827990 11822934 ~ 11824055 (+) False LOC122327289
TU224831 other downstream 832400 11827344 ~ 11833374 (+) False LOC122327134
TU224905 other downstream 1015525 12010469 ~ 12268139 (+) True LOC122327127
TU224911 other downstream 1053474 12048418 ~ 12263031 (+) False LOC122327127

Expression Profile