RNA id: TU224475


Basic Information

Item Value
RNA id TU224475
length 1911
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G151707
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 11128526 ~ 11164328 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTCGCTTGACTATCAGAAGGGACGACAGCTCCTTTACCTTTGGCGTACATGCTGGATTCTGTTTTAAGACTTTTACCCCACTCAACACCTGTCAAAGAAAGCAGCCAGGAAAACGTTCTATCTCCATAGCTACCCCCTTTAGTGTTTTccctccccctcctcctctctcccttttttttttttttttttttttttttATTACAACATGAAAACACTTTATTCGTCTGATATTATGGAGTACCTTATGGGAAActgttcaaaaaaagaaaagcaaaaaagataTTATTGACTTGTATTTCATACAGTAACGATGAACCAGTAGATATTAAATGGCTTATTAAGGTATCCCACCGCTTCACTTCTTAGTAATCTATGGTCATAATTACAGTGCCTACTGAACATtaagcaaaaacacaaagatcACGAGCGTACAGCAGTTTGCTTCCAAAATAGACGGGACGATATATTCAACGTCTCGTAGCGTACTAGCATGCACTGTGGCTGGGCCTAAATGGGGAAAAATAGCAGCACAAGACAAATAGTGCCATGAAAGCCTGTCGGTTCTACAGTCTGGTTACAAAAGATATTTGTCAAAGCTTGGTGCTAGGCGTTCAAAACCCGACCCGACTCCACCCCATCGCTTTTTTTTGGGCAGAGGTGAAGAATGTAGGTGGAAAGGCTTGGGAATAATGCAACACTTCACATTCGGTCTGAACAGCAAGCGCCTTTTCCTGTCTGTAACGGTTTACGTTGGGAATAAATTTACAGTTACGCTTCATAAAATCTAAGGAGCTAAATGAGAGATGAAAGACTACAGGCCTAAGCTtcgaataaatacataaataaataaatacacaccaTGCTTCCTTCACGTGAATGCGAGTAGTTTAGTCGGGCTTATTATGGATGCATAATTATGCTTATGAAAAAACGCCCTCAATACCTGCTTGCATACAAAACGTCCTAAAGCCTATAAAGACGGTTCTTTTTAAATCGAACTATACAATTGAACAAAATCCTAATTTAACTCTTCAAACTACTGACATTCACATTTGGTAAAGTAATTAAGAGTCCTTGTCAGTGCGATTACATATCAGTTCAAAGGACGCATTCATGTTTTGTAAACGTTGTTACGAAAGCGCATCTTTCGCTAATTGGCCGCGTTTGATTTTCCCCCCGTTGCTCGTCTTTCGCATCAAAGCGAGAATCCACGAGCGCGGCAGATTACCTTCAAAGCTCGTCTTCCGGTTCGAACGCGACGCTAATTGATAACGGGGAGGGGCGCTTGGAAAGCGTTCACCGCGAAACTGAACGTTCGCCCGTGGTGTCTAAACGCCCGAAGCTCGACAAATAACCCCTGCTCTTCTTTTGAGGGTCTGGCCCAGTCTGCCGTCCGATTCCCTGCGTTTGCGCGGTGCGTTTTTTAGGAATTCGCATCACGACAGCGATAAGAAACGTGTTGCGAAGTTGTTCATGAGCTCTAGTGTGTGTATACGTTACAGTCAAAAATGCGTTAGTACATTATGTGAACAAGCGCCTATACTACAGTTCCATGAGGATTTGCGAATTCAGTGAGGAGACTAGTATTCAGACAGGACGTACGTCGTAACccatataataaatgtcatcatgcatgttttgcttttgttttttatatagaaaaacGATGTAACTTCCCCTTTAAATTGCGAGAAATAGCTCTGGAGATGAGTTGAACCCTAGTCGTCAAAAGTGTCGACCTCTTCAGTGCTTTTACAGGGACGTTTTGCTGAGGTCAACCTTGACCGGAAGTGGCCCCGCCTCTTTGCTCTCCTCCGATTGGTCGATTGTCATTGCGATCACTGGCGTCAAGTGATAGGGGTTGACCTTCAGGGAGTCATCCATGTACTCTTTATCTCCGTTGATGCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224524 lncRNA upstream 51457 11075896 ~ 11077069 (+) True G151738
TU224470 lncRNA upstream 133582 10935035 ~ 10994944 (+) False peak3
TU224469 lncRNA upstream 135498 10935035 ~ 10993028 (+) False peak3
TU224471 lncRNA upstream 135498 10973022 ~ 10993028 (+) False peak3
TU224464 lncRNA upstream 195531 10932663 ~ 10932995 (+) True G151703
TU224539 lncRNA downstream 18513 11182841 ~ 11183080 (+) True G151750
TU224634 lncRNA downstream 132580 11296908 ~ 11297153 (+) True G151815
TU224632 lncRNA downstream 169841 11334169 ~ 11384582 (+) True G151813
TU224630 lncRNA downstream 201765 11366093 ~ 11384582 (+) False G151813
TU224646 lncRNA downstream 223304 11387632 ~ 11388850 (+) True G151820
XM_043223277.1 mRNA upstream 136422 10987836 ~ 10992104 (+) True peak3
XM_043223326.1 mRNA upstream 197575 10923748 ~ 10930951 (+) True nfil3-4
XM_043223333.1 mRNA upstream 206495 10918089 ~ 10922031 (+) False si:dkey-172o19.2
XM_043223334.1 mRNA upstream 206495 10918573 ~ 10922031 (+) True si:dkey-172o19.2
XM_043223288.1 mRNA upstream 238334 10874428 ~ 10890192 (+) True onecut3a
XM_043223286.1 mRNA downstream 12180 11176508 ~ 11185087 (+) True crlf1b
XM_043223287.1 mRNA downstream 12182 11176510 ~ 11185087 (+) False crlf1b
XM_043223230.1 mRNA downstream 25524 11189852 ~ 11225519 (+) True cpamd8
XM_043223327.1 mRNA downstream 61832 11226160 ~ 11229779 (+) True odf3l2b
XM_043223260.1 mRNA downstream 68407 11232735 ~ 11249556 (+) True shc2
TU224458 other upstream 206598 10919060 ~ 10921928 (+) False si:dkey-172o19.2
TU224353 other upstream 291161 10806052 ~ 10837365 (+) True G151620
TU224351 other upstream 291161 10816135 ~ 10837365 (+) False G151620
XR_006247780.1 other upstream 419416 10709044 ~ 10709110 (+) True LOC122328232
XR_006247720.1 other upstream 1135085 9970622 ~ 9993441 (+) False gatad2ab
XR_006247707.1 other downstream 154361 11318689 ~ 11323940 (+) False mier2
TU224828 other downstream 658606 11822934 ~ 11824055 (+) False LOC122327289
TU224831 other downstream 663016 11827344 ~ 11833374 (+) False LOC122327134
TU224905 other downstream 846141 12010469 ~ 12268139 (+) True LOC122327127
TU224911 other downstream 884090 12048418 ~ 12263031 (+) False LOC122327127

Expression Profile