RNA id: TU224564


Basic Information

Item Value
RNA id TU224564
length 1690
lncRNA type intronic
GC content 0.36
exon number 1
gene id G151773
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 11184230 ~ 11185919 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ccaGATCTGCTGAAGGCAAATGATAGATCTGGGTAAGAAACAATTATTCGCTGGTTCAGTTGAAGCCGAGAAGAAACACTGGATCAGCTGATTCATTAACAAGATCTGACACGAATAAACAATTCATTTATAACATTGATAATTCTACCAGAAATGAAGTGAAGAGTGTCAGATGGATcaattttatgatgcttttgttcattttggagtttttttgGCATTAGTTTCCATGAAGTAACTAAGTATCGTAGTTAGTTGTTTTTTAAGTAGCAACGTAATATTGCTCATTTAGTTTGAAACATCAGTAAGCTGTAAATGtccttgtttttcatttttataacctAAGTCTTCTGAGGCCATGTGATAGTTTTGTGTCAGAAACAGTTATTCAGTGAAGTCGATCTAACTCGATATTTATTAACAACTCGGTCAGATAAGTTTCATTCATTTACGACTTTACTAGTTTTTCAGTGAACAATGACTTAAAGCCATCTGACCCTCCTTAGACAGCAACACGACTcaaatgttcccaggtccagaaatctagtaaatacattggtaaaacagGATGTAATGATAAACAAAACTCAGCCGCTCTTCTCCCGAGTTAtgtcttctgccattttagagagtattaCAACGCACACGCAAATACGTTAAAGTGTGCGTATGCTTTACATTGTAAAACTCTCAAAAATGGCAGAAGACGTAACTCGGGAGTataaagctacgagaatactttttgtgcgcgaagaaaataaaaataacattattgtaTAGAGTCATTATTTTGTTGTCTCACTTGGATTACTGTAACAATCTCCTTGCCAGATTCCTGAGCTTTGGTTGTGTAAGGATCCTTGCCGTCTAATAAGGGTCAGAAAACTctcatatttaatcaaaaatatcttattttgcgttccaaagatgaacaaagttcttacagatttggaacgaTATGTGAAGGtgagtttttgggtgaactatccctttaaatttcaatatgtctttaaaaaaattgtatgattTCAGAAGATTTGGGACATAGTGATAAATGGACtattttatgatacttttacGGTGCTTTTGTTTATTCTGGACCATCCGCAGCATCAGTccttgtttaatttttttaaagtaactcacttttaaagattaatatttaaatgctcaTATTTTGTTGTCGCTTACGAATTCTCCCTTTCAGCAAATTAGtttgtaaattttttattattatttttttctccaatcGTTGAGTTGCAAAGgttcttttttttggatgaaaggTCAATCAGAAAGAGAGAATGCCCTATTATCttctttcttaaaaacattttatgctcTCTCGTAATTTGGAGTCtttctttatgttttaatgcCCTTATAAATAACATTGTCTGAGACAAAAGCGTGCTTCCTTTGACGTGTTTGATGGGGACTGCAGCAGGAGGCAAACAGTAGATCATGTCACCAAACGACAGGCTCCTTGCAGATCCCTTTAGACAGTCTCGGCTCGTCCCAAATGAAAGTCCCAAGCACTGGAGAGTGATAAAAACCTTGTCATCGCAGGCCCCCGCAAACTCTCCCAAGCCTTCTTTAGAGTTTCACTATGATTTACCGCTTTGTAGTACCTGAAAGGCAAGACAATGGCATTTACAAGTGAATGTGATGAGTTGATATATGAGGACAG

Function

GO:

id name namespace
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0009987 cellular process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224566 lncRNA downstream 3840 11179922 ~ 11180390 (-) True G151775
TU224565 lncRNA downstream 4798 11176563 ~ 11179432 (-) True G151774
XR_006247712.1 lncRNA downstream 24501 11155787 ~ 11159729 (-) True LOC122327759
TU224552 lncRNA downstream 138003 11043997 ~ 11046227 (-) True G151762
TU224541 lncRNA downstream 189280 10935052 ~ 10994950 (-) True oaz1a
TU224584 lncRNA upstream 44067 11229986 ~ 11231103 (-) False cks2
TU224704 lncRNA upstream 111306 11297225 ~ 11297463 (-) True G151858
TU224733 lncRNA upstream 186210 11372129 ~ 11378059 (-) True G151870
TU224753 lncRNA upstream 279944 11465863 ~ 11466339 (-) False gna11a
TU224751 lncRNA upstream 279989 11465908 ~ 11467098 (-) False gna11a
XM_043223317.1 mRNA downstream 8235 11162617 ~ 11175995 (-) True tmem59l
XM_043223307.1 mRNA downstream 55560 11077596 ~ 11128670 (-) True ssbp4
XM_043223299.1 mRNA downstream 108577 11062765 ~ 11075653 (-) True fkbp8
XM_043223275.1 mRNA downstream 123159 11031722 ~ 11061071 (-) False ell
XM_043223274.1 mRNA downstream 123159 11031722 ~ 11061071 (-) False ell
XM_043223341.1 mRNA upstream 372 11186291 ~ 11188692 (-) True rex1bd
XM_043223340.1 mRNA upstream 372 11186291 ~ 11188678 (-) False rex1bd
XM_043223342.1 mRNA upstream 44055 11229974 ~ 11231249 (-) True cks2
XM_043223250.1 mRNA upstream 64069 11249988 ~ 11266155 (-) False ankrd24
XM_043223249.1 mRNA upstream 64069 11249988 ~ 11264084 (-) False ankrd24
TU224207 other downstream 761895 10419127 ~ 10422335 (-) True micos13
XR_006247701.1 other downstream 862567 10286578 ~ 10321663 (-) False polrmt
TU224081 other downstream 1220604 9957811 ~ 9963626 (-) True G151425
TU223881 other downstream 1681224 9498680 ~ 9503006 (-) False gpx4a
unassigned_transcript_2544 other upstream 162461 11348380 ~ 11348451 (-) True trnaq-uug_21
TU225293 other upstream 859550 12045469 ~ 12049531 (-) True si:ch211-117l17.6
TU225397 other upstream 956923 12142842 ~ 12145575 (-) True G152276
TU225529 other upstream 1374954 12560873 ~ 12567345 (-) False LOC122328185
TU225672 other upstream 1720230 12906149 ~ 12914226 (-) False cxcl12b

Expression Profile