RNA id: TU224670


Basic Information

Item Value
RNA id TU224670
length 1858
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G151841
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 11465863 ~ 11468274 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

caACCAACCGAACAAGAAATACATTACAAAGTAATACAATACTTTGATTTTATACACCACTacacaaaagtttattttagccgttttatcaaaaacaaatgtattatattaaagtgTCCTACATACAAGTGTTCAGGTAATGCATCGACattagaaataaaagaaagtaaagaTAGCTTCATATTGTACGCATCCATCACTTCGGTGTGGACCTCAAGCGAAAGCATCGTTTCTATTCATTAGTGTCTGCATCTCTCGGAGTACCAGGAAAAAGTTGAGGAACATGAGTGGAGTTCGTTCCTTTACTGCAGAGTAGGTTCAGTGCATCAACccagggaggaaaaaaaaccaaaaacatcaAACTTCATCACAAATTGTTGAGAATGACCCAAAAAACCCCTTAAACAGCAGCTGAACAGGATAAATCAAAGCTACTCGCGCCATCTGCAAAGCCTATTCTGACGTTTTGTGGACCTAAACTGGTACGAAACGACTAGCTGTAGTGTTTTTCCGTCGGATAAAAGAAAGGTGTTTCTCAGATTAGGCCTAGCCCTTTAAAACGAAAGCCGTATGTACAAAAGCTTTAAACGTTCACGTGTTCAAAAATGCCGTCGTAAATTGCAGCTTCACTACTTGCACAACCACGAAACAGTTTGAAATTGGCATATGACGACTGATAGTACCGTCCCACCCGAGTAAACGCTTTAAAAGGGATGAAGTGTGAAGCCCCGCCCAGAAACGTGAAGGTATGCAAATCGGgatgtttggaaaaaaatattaacaaaaaaaaaaaagcagcttaacTGGCCTGGCACAGGAGGATTGTTTAGttggaaaaaggaaaagacaaaaaaaaaaaaaaattcgcaATTTGGCAAATAATTCGtaaaaaatgcactaaaaaggTCCAAATGTTTATGTAAAGAAGGCCTAACGGGATTTATTAAACGCAAATATGCAGGGAAAAATTGCGTGGACACCTTCGAAACCATGCTTCCAAAGTAATTAGtcaccaaaataaaaagaaccGTCTTACAATACATTCAATcactagttaaaaaaaagaaaaagaaaaaaatattgcgcCAATACGTGACCACTGTGATTCAAAACATTGTGTTAGATCGCGTGATTTTTCCACAATTCCGGCTTCTCTCAAGCTACGCCGTTTCAATAATATGAACAAAGCCGATAAGACTGTACGTGTGCTAATGCGATAAATTCATAGCCAGTCGGCtgggggaagagagagagagagagagagagagaaaattaaaaGTAAGGTTTACGATAAAGGAGTAAACAGGACTCAAAAGCAATACCGTCACGGCCCCCCGAAACCAAACGTGGCAAAGGGAAACGTGTGACATCACTTCCTTCCTAAACTCACGAAATCAAAACAGCCCGTTCGAAGCCGTTTGATTCGCAGCAGGAAATAGCATAGGTTTTCCGTACGTCTTCGAAAGGTGCACCCCGGATGCACTGCAAGCTGAACCTACAGAAAACGGCGTGGCCCGCGCTGTCCCTGATTCAGATACCCGCTCCGGCGTACCTATCGCTCTATCGTCATAGAGTCCTTTCATTCTCTGCCCACAGTTAGCCCTTGTAATGAAAAGTATGAAAACTCACCTGAATTACATCATAAAGAAACCCCcaccccacaaaaaaaaaaaaaaaaaaaagccagctAGCTATCCATAAAGCTAAACCAAGCGCCGAGAACTAAGATATGGTACTACGAAACCGAGAGCGAACTCTCCAAAAACAACGCAAGCAGAGACCAGTTAAGAACTCGACCACTGATAAAATTCTCAATTTCCTATTTGCATAAAGCGATGTTGATAAAAATGGAAATCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224669 lncRNA upstream 83 11465863 ~ 11466334 (+) False G151841
TU224671 lncRNA upstream 83 11465918 ~ 11466334 (+) False G151841
TU224659 lncRNA upstream 39083 11426960 ~ 11427334 (+) True G151832
TU224646 lncRNA upstream 77567 11387632 ~ 11388850 (+) True G151820
TU224632 lncRNA upstream 81835 11334169 ~ 11384582 (+) True G151813
TU224779 lncRNA downstream 81920 11550194 ~ 11550870 (+) True G151903
TU224781 lncRNA downstream 83192 11551466 ~ 11551789 (+) True G151905
TU224782 lncRNA downstream 83619 11551893 ~ 11552311 (+) True G151906
XR_006247734.1 lncRNA downstream 309209 11777483 ~ 11786711 (+) True LOC122327899
TU224829 lncRNA downstream 358291 11826565 ~ 11835103 (+) False LOC122327134
XM_043223252.1 mRNA upstream 84680 11353277 ~ 11381737 (+) True tle2a
XM_043223254.1 mRNA upstream 84680 11353277 ~ 11381737 (+) False tle2a
XM_043223253.1 mRNA upstream 84680 11353277 ~ 11381737 (+) False tle2a
XM_043223255.1 mRNA upstream 84680 11353279 ~ 11381737 (+) False tle2a
XM_043223325.1 mRNA upstream 121403 11330705 ~ 11345014 (+) True plpp2b
XM_043223315.1 mRNA downstream 39187 11507461 ~ 11512935 (+) True LOC122327738
XM_043223316.1 mRNA downstream 39194 11507468 ~ 11512935 (+) False LOC122327738
XM_043223314.1 mRNA downstream 53730 11522004 ~ 11535741 (+) True LOC122327737
XM_043223313.1 mRNA downstream 53733 11522007 ~ 11532101 (+) False LOC122327737
XM_043223519.1 mRNA downstream 319312 11787586 ~ 11792458 (+) True LOC122327862
XR_006247707.1 other upstream 142477 11318689 ~ 11323940 (+) False mier2
TU224458 other upstream 544489 10919060 ~ 10921928 (+) False si:dkey-172o19.2
TU224353 other upstream 629052 10806052 ~ 10837365 (+) True G151620
TU224351 other upstream 629052 10816135 ~ 10837365 (+) False G151620
XR_006247780.1 other upstream 757307 10709044 ~ 10709110 (+) True LOC122328232
TU224828 other downstream 354660 11822934 ~ 11824055 (+) False LOC122327289
TU224831 other downstream 359070 11827344 ~ 11833374 (+) False LOC122327134
TU224905 other downstream 542195 12010469 ~ 12268139 (+) True LOC122327127
TU224911 other downstream 580144 12048418 ~ 12263031 (+) False LOC122327127
TU224914 other downstream 770508 12238782 ~ 12265692 (+) False LOC122327127

Expression Profile