RNA id: TU224757



Basic Information


Item Value
RNA id TU224757
length 308
lncRNA type read_through
GC content 0.31
exon number 1
gene id gna11a
representative False

Chromosome Information


Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 11465852 ~ 11490654 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TAGGTTACCGTTAGCTACAACAACATGGAATGTACGCTCTTCATTAATAATATCGAAAAATAtcgaaaattttattttgtatcttCATCTCGTatattgtgtaatttttttttataggacacaaaaggagaaattttaaagaatgttcatgctgctcttttttaaatacaataaaagcttATACGGAGCAAAAATCTGCCAAGAAAGCAGCCCATGTGACTGGCGCAGTGACttagagaaataaaaacaaaagaaatgtatgTCTTGAAAGATTGACTTGTTTTCTCGCTTACAcacatttacctttt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU224752 lncRNA downstream 21602 11466452 ~ 11467524 (-) False gna11a
TU224751 lncRNA downstream 22028 11465908 ~ 11467098 (-) False gna11a
TU224753 lncRNA downstream 22787 11465863 ~ 11466339 (-) False gna11a
TU224733 lncRNA downstream 111067 11372129 ~ 11378059 (-) True G151870
TU224704 lncRNA downstream 191663 11297225 ~ 11297463 (-) True G151858
XR_006247713.1 lncRNA upstream 1240 11490673 ~ 11492960 (-) True LOC122327760
TU224762 lncRNA upstream 19967 11509400 ~ 11518141 (-) True G151889
TU224767 lncRNA upstream 32597 11522030 ~ 11523422 (-) True G151893
TU224771 lncRNA upstream 38665 11528098 ~ 11530610 (-) True G151896
TU224780 lncRNA upstream 60765 11550198 ~ 11550870 (-) True G151904
XM_043223336.1 mRNA downstream 24051 11440216 ~ 11465075 (-) True tle5
XM_043223335.1 mRNA downstream 24055 11440216 ~ 11465071 (-) False tle5
XM_043223259.1 mRNA downstream 63045 11382193 ~ 11426081 (-) False tle2b
XM_043223258.1 mRNA downstream 63045 11382193 ~ 11426081 (-) False tle2b
XM_043223257.1 mRNA downstream 63045 11382193 ~ 11426081 (-) False tle2b
XM_043223291.1 mRNA upstream 77584 11567017 ~ 11571678 (-) True LOC122327726
XM_043222520.1 mRNA upstream 304140 11793573 ~ 11804698 (-) True LOC122327290
XM_043222517.1 mRNA upstream 315382 11804815 ~ 11815578 (-) True LOC122327288
XM_043222518.1 mRNA upstream 315382 11804815 ~ 11815577 (-) False LOC122327288
XM_043222365.1 mRNA upstream 352155 11841588 ~ 11844852 (-) False LOC122327182
unassigned_transcript_2544 other downstream 140675 11348380 ~ 11348451 (-) True trnaq-uug_21
XR_006247709.1 other downstream 300448 11174143 ~ 11188678 (-) False rex1bd
XR_006247708.1 other downstream 300448 11179704 ~ 11188678 (-) False rex1bd
TU224207 other downstream 1066791 10419127 ~ 10422335 (-) True micos13
XR_006247701.1 other downstream 1167463 10286578 ~ 10321663 (-) False polrmt
TU225293 other upstream 556036 12045469 ~ 12049531 (-) True si:ch211-117l17.6
TU225397 other upstream 653409 12142842 ~ 12145575 (-) True G152276
TU225529 other upstream 1071440 12560873 ~ 12567345 (-) False LOC122328185
TU225672 other upstream 1416716 12906149 ~ 12914226 (-) False cxcl12b
TU225673 other upstream 1416814 12906247 ~ 12914226 (-) False cxcl12b