RNA id: XM_043223309.1


Basic Information

Item Value
RNA id XM_043223309.1
length 5436
RNA type mRNA
GC content 0.42
exon number 8
gene id gna11a
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 11465852 ~ 11490654 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTAATATGCTATTAGTCTCAAATGCATTTCACGAAACACTAGGTATTATTTGCAGAGTAAAAGAGTATAACTGGTATTTTTCCCCTGACTAAGAGAAGCAAGGAGAAGTTGGTTTATatggttttagtgtttttaagattttagtatattttgttttatggcAGAAAAGTCTACCGTAAGCCTCACTGTCAAAAATgtatctgtattattattattttagttttgatttgGGCAAAATCGTTAAGGGGTTAAGttcaactaaaatgaaaattttactCGGCCTCTgctaagaccttcattcatcttcgcaacttttttcatttttagactTAAACGACCTGCATTTAAATCAGTTTGTCTTTGTGCTTTCTTTTCAATGATAACCTGAACGACTTCCTCAGTGAAAAATAAgcaggtggtgatgatgatgttaCAAAACAGAGAGAATCGAGAAGTTAATTCGTGTTTAGTCTCGTTGATATTGCTTTGCGTTTGTATTACATGTAGGAAAGTGTTAGGTATCATTAAATCAAAGACAAGAACGTCTTGCGCGTTAGAGTTGGACGTGGAATTAGATgtatttcattaaatgcattttcttgaGCTAATGAGAACGTGCTAAACTGTGCATAGCCTTAGATAAACTGAAAGTCTCTTTAAGACTGATGCTTGTCCTATTGACTGCCAAGCAAGGACCAGagaagtatgaaagacatccaCAAAATAACGTGCCGTTACGAAGCCACGAGGATATTTTTTTcgtgcacaaagaaaataaaagtaacgactttattcagtattttgtctcctctgtgtctctccgCACGCACTGTAGCAATTTTGGAGAGCGTCTGCTGTACGCGCTATGTGCGCTGAGGGACAAGGCTCCGTTTTTGTTCATATCGAAGCCTAAAAACGTGTAGAAAACCACACAGTGGCCTGCAGAATACATAGTTGCtgtggatattctccaaaatgttGCTACGGTGACACAAAGAGATACAGAGaagacaaattattaaataagtcattaatttttatttattttctttgcagacaaacaaagctttttatgggtttggaacgacatggagTGAAGGGATTAATTACAAAgctttaattttggggtggagtatccctttaagtcaTAGTCATCATCCTTGGTGAGAATGTGGCTTTGCAGTgtagtgaaataaatattttgttagaaATGTCATAATTAGGTTACCGTTAGCTACAACAACATGGAATGTACGCTCTTCATTAATAATATCGAAAAATAtcgaaaattttattttgtatcttCATCTCGTatattgtgtaatttttttttataggacacaaaaggagaaattttaaagaatgttcatgctgctcttttttaaatacaataaaagcttATACGGAGCAAAAATCTGCCAAGAAAGCAGCCCATGTGACTGGCGCAGTGACttagagaaataaaaacaaaagaaatgtatgTCTTGAAAGATTGACTTGTTTTCTCGCTTACAcacatttacctttttttgtatACAGCAAtgacacattcaaggcccagaaaggcagtaaagacattgttaaaatagcccATGTCACATCAGCGATTCAGCCGTAATGTTATCAAGCTACAATTttagtatgttttgttttacggCAGAAAAGTCTATCGTAAGCCTcactgtgaaaaatgtatttggtgAACTGCATCTTCATTCTTATTGtaggttagattttttttgttcatatcgTTAAGAGGTTAGTTCaactaaaatgcattacttaCTCGGCCTCTgctaagaccttcattcatcttcgcaacacaaattaaaatattttcatgaaatccaagagctctctgaccccCGCATAGACTGAAACAAGAGTACTTtcacaagaatactttttttgtgcaaactttATTGTGTTTCTTCACTTCCGTGTCAGTGTTTGAGTCGAGTTCGCGAGAGATCAACCAATGCTGTATGAATGTTGTGGTGTTGCTTTcaatgcagggtcagaaagctcccGGACTTCATCAAAAATAGCCATCTGTGCTCCGAAGATGAACAAGGCCTTACGGGTTTGAAACGATGgcaagtaattaatgacagaactttaaTTTTTGGGTCAAGTCTCCCTTTAATGCGTGTGAAATAAAGGACAACTTGTATTCGAAAATGCTCCAAAATAGCAACAAGATCGAGAGCCTACTAATGCATTTCGAATAGCTTCAGGTGAAATATTAATTGGTGACTCTTTCCAAGCAATTTCCACACGGTGTCGATACAGAGCAAGGAATCACCTGCAAGTGTGCGATTCTCTCGTACAGGTTACGATAAAAACACCCCTCGGGTCACTTCGACTATTAACGGAGCAGACGCGCCGCTTGCCTCCTAGTAATAAACCTTCGCGTGTGAATATATGTGATCACGCAAACTATTAAAGGTGTTTTATGAAAACGTCGAGAGGACGGTGCTTCTCCAGATATGTTTGACTGGGAATGGGCGTTGTCCATTCAGTCGAATAGCAGGGTTTGTGGCGAGACACGCCCCGCGAGCTCCACAGCCGCTCCTCCACCAACCTTGCCTCGTTCCAGGCCCCGCCCCCTCGCGCGCTTCCTCCTCCGATTGGCTCGTCGCCCTGTCGCTCACGCTCCATTTTCCAGCTGTCGCAGCCCCAGGTTTGTGTGCGACTCACACCGGACTGGACGGTGCGATCATCTGGAAATTTTTTCACTCCgtcgaattttttttttttggagcccACACCTGTGTCATTTTCCTTCGCCGGTTTTTCCGACTTTAAATATCCCCGAAGCCCGGCCGGATGCAAAGAAATGAGCGGCGAAATCGGCGCGTGGAGTGTAAATAAAGATTCCGGCTAGCTAGCAGCTTAGCCCACCCAATTAAGCTAGTTAGTGCGCTTAGCTAATTAACTTTTCGGCTTTTGGATGCTCAAAATCAAATGTTTGCACTGTAGTCGGTGTTATATACGCACGCAGCGTGTCTGAAAGCGCATATGGCTGTCTTGTGCCACCTGTCGCCGTGTGTTAGCTAGAGATCCGGGCAGCTGATGGACAGTGTTGCGGTGAGTCTGGGCACTGGGGCGGTTAGCTTAGCGAGACAGCAAAGGACAGCACGGATGTCGTGGCAGGCTAGTGTGTCCCTCCGGGACTCTGGTTGGTAGTCACTACAGATACTAAAAACAGGGCTCGAGTGGGTCTGATAGCAGGCGAGATCTTTAGATTCACATCTGGCCTCCAATCTCATCCAGTCTTTGGCCTTGCTTGATAGATGCGTTTGTATGAGCAGGCTGGGGTCTCTTCGGCTTCATCGATTTAACGTTACGTCTACCGCGAGGCATCCTGCGTTTTTAAACGACGTTTCCCCCCAAATCCTCCCTGTTCCTCTTTCGACGCGGTTGCAAAGGGAAGCGGGGCCGTAGAAGTGTGTCAGATCGGGGTCGGGATCTCCAAACGCTGTGGTGATGACTCTGGAGTCCATGATGGCCTGTTGCATGAGTGAAGAGGCGAAGGAGTCCAAAAGAATCAACGCCGAGATCGACAAGCAGCTCCGGAGAGACAAACGAGATGCGAGACGAGAGCTTAAACTCCTCTTACTGGGCACGGGCGAGAGCGGCAAGAGCACGTTCATCAAACAGATGCGCATCATTCACGGGGCGGGCTACACCGACGAGGACAAGCGCGGCTTCACCAAACTCGTCTACCAGAACATCTTCACCTCCATGCAGTCCATGATCCGCGCCACCGAGAACCTCAAGATCCCGTTCAAATACGAAGAGAACAAGAACAATGCTCTGCTGGTGCGAGAGGTCGATGTGGAGAAGGTTTGCTCCTTTGACCAGCCCTATGTCAGTGCAATAAAGAAGCTGTGGTCGGATCCAGGCATCCAGGAGGCCTACGACCGCAGACGGGAGTACCAGCTCTCTGACTCCACTAAATATTACCTTAGCGATTTAGAGCGCATATCGACTCCGAGATATGTGCCCAGCCAGCAGGATGTGCTGAGGGTCCGAGTGCCCACTACTGGCATCATAGAGTATCCCTTTGACCTGGAAAATATAATCTTCAGGATGGTGGATGTCGGAGGGCAAAGGTCAGAGCGCAGGAAGTGGATCCACTGCTTTGAGAACGTCACGTCTATCATGTTCCTGGTGGCCTTGAGCGAATACGACCAGGTCCTTGTGGAGTCTGACAATGAGAATCGCATGGAGGAAAGCAAGGCGCTGTTTCGCACAATCATCACCTACCCCTGGTTCCAGAACTCCTCAGTCATTCTGTTCCTAAACAAGAAGGACCTTCTGGAGGAGAAGATCATGTACTCTCACCTGGTGGACTACTTCCCTGAATTTGACGGTCCTCAGAGGGATGCCCAGGCGGGCCGCGAGTTCATCCTTAAGATGTTCGTGGACCTGAACCCGGACAGCGACAAGATCATCTACTCGCACTTCACCTGCGCCACCGACACCGAGAACATCCGCTTCGTCTTCGCCGCGGTCAAGGACACCATCCTGCAGCACAACCTCAAAGAGTACAACCTAGTTAAAGGAACGAACTCCACTCATGTTCCTCAACTTTTTCCTGGTACTCCGAGAGATGCAGACACTAATGAATAGAAACGATGCTTTCGCTTGAGGTCCACACCGAAGTGATGGATGCGTACAATATGAAGCTAtctttactttcttttatttctaatGTCGATGCATTACCTGAACACTTGTATGTAGGAcactttaatataatacatttgtttttgataaaacggctaaaataaacttttgtgtAGTGGTGTATAAAATCAAAGTATTGTATTACTTTGTAATGTATTTCTTGTTCGGTTGGTtgctctttatatatatatatattttttttttttttcggttctttttttttttttttttttttttttaagcataccAAATGTAAATGATGTACTATACTGAGTGTGCCAATCCCTTTTGATTTGTAGAGCCAGACTCTTTACAAGTGCCAATGTTGtggaaatcatttaaaaaaggacTTGTGTATTTTATGGTCcggtttttaaaaacaaataaacattaagtATGTGATTATGGTAAATGCGCAACAGGAAAAGGAcaattttattctgtatttaagATTAAAGATGACaaactgctgtttttaaaagagatgacattttaattgcatgtgtttgtttttggtggAGAGGGTCGGGTAAAGGAGAAACCGTATTAACGCGAAACCCTGCTGACAAGGGGCTTaattattgttcatttacagtattttagacatatttctctttttgtatgtttcatttCAACCACTTTTGCCTGAACCTCATTCATACATGAAAATGACTTTCATAGCCTTctcctttaaagaaaaaaaatatccattttaaattggaataaaaTTTGTTCCTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224733 lncRNA downstream 87793 11372129 ~ 11378059 (-) True G151870
TU224704 lncRNA downstream 168389 11297225 ~ 11297463 (-) True G151858
TU224584 lncRNA downstream 234749 11229986 ~ 11231103 (-) False cks2
TU224564 lncRNA downstream 279933 11184230 ~ 11185919 (-) True G151773
TU224566 lncRNA downstream 285462 11179922 ~ 11180390 (-) True G151775
XR_006247713.1 lncRNA upstream 19 11490673 ~ 11492960 (-) True LOC122327760
TU224762 lncRNA upstream 18746 11509400 ~ 11518141 (-) True G151889
TU224767 lncRNA upstream 31376 11522030 ~ 11523422 (-) True G151893
TU224771 lncRNA upstream 37444 11528098 ~ 11530610 (-) True G151896
TU224780 lncRNA upstream 59544 11550198 ~ 11550870 (-) True G151904
XM_043223336.1 mRNA downstream 777 11440216 ~ 11465075 (-) True tle5
XM_043223335.1 mRNA downstream 781 11440216 ~ 11465071 (-) False tle5
XM_043223259.1 mRNA downstream 39771 11382193 ~ 11426081 (-) False tle2b
XM_043223258.1 mRNA downstream 39771 11382193 ~ 11426081 (-) False tle2b
XM_043223257.1 mRNA downstream 39771 11382193 ~ 11426081 (-) False tle2b
XM_043223291.1 mRNA upstream 76363 11567017 ~ 11571678 (-) True LOC122327726
XM_043222520.1 mRNA upstream 302919 11793573 ~ 11804698 (-) True LOC122327290
XM_043222517.1 mRNA upstream 314161 11804815 ~ 11815578 (-) True LOC122327288
XM_043222518.1 mRNA upstream 314161 11804815 ~ 11815577 (-) False LOC122327288
XM_043222365.1 mRNA upstream 350934 11841588 ~ 11844852 (-) False LOC122327182
unassigned_transcript_2544 other downstream 117401 11348380 ~ 11348451 (-) True trnaq-uug_21
XR_006247709.1 other downstream 277174 11174143 ~ 11188678 (-) False rex1bd
XR_006247708.1 other downstream 277174 11179704 ~ 11188678 (-) False rex1bd
TU224207 other downstream 1043517 10419127 ~ 10422335 (-) True micos13
XR_006247701.1 other downstream 1144189 10286578 ~ 10321663 (-) False polrmt
TU225293 other upstream 554815 12045469 ~ 12049531 (-) True si:ch211-117l17.6
TU225397 other upstream 652188 12142842 ~ 12145575 (-) True G152276
TU225529 other upstream 1070219 12560873 ~ 12567345 (-) False LOC122328185
TU225672 other upstream 1415495 12906149 ~ 12914226 (-) False cxcl12b
TU225673 other upstream 1415593 12906247 ~ 12914226 (-) False cxcl12b

Expression Profile