RNA id: TU224762


Basic Information

Item Value
RNA id TU224762
length 1450
lncRNA type intronic
GC content 0.37
exon number 2
gene id G151889
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 11509400 ~ 11518141 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTTTGTTATTCTCCTCCAGAAGTTGGTCGTACTCGCTGAGGGAGGCCAGAAATATGAGCGACATCACATTTTCAAAGCAATGAATCCATTTCCTTCTCTGTCCTCTCTGACCTCCGACGTCTACAATCCTGAAAAGACAGACGGACCAGAAATCAAGTTCAGTTATCTCGTCCACTTTTCTATTGGGTTTTCCTTTAAATCAGGTAGTGGCTCACCTTGATTTACTTGAACATTTGGTCTTGTCAGTTGTCAATGCACAGAATGTCAATAGAGGTAACGCTGTTTGTATTTCAGTATATGATGCTATCATTAGTTAAAGAgataattcttttaaaaatgaactaacCTTTCCACACCTTTctcagaaagaataaaagatcatctaaagaatattaaaacatactCTTGAAGATGATAGATGTATTTCTGTTTCTTgggtttcataaaaaaaaagtcttcatttgtgtttcgaagatgaatgaagttcttatgggtttggaacaacttgagggtgagtaattaatgacagaattttcatttttgagggaactatccctttaaggagcGTGATTGCTCATTGCTGTACCTGAGAGTTATCTTCTCCAAAGAAAAGCAATGGTCTGTGATGCCGGTGGTAGGGAATCGGACATGAAGAACATCTTGAGACGTAGGGATGTAGTCTTGAGTTGCGATGCGGTCCAAATGATCAATAAAGCTTTGAAAAAGACATCATTTATACACTTTGATTGAAAATCCATGTGCCAAACCTTATCTccgcatttatttgcataacattGAGGAAAAAGACAAAGATGCAGGTAGTCAGGAAAAGGCAGAAACTGTTAAACACACTTACTATTTAGTGGAGTCTAACAGTTGATACTCCCTGCGCCGACTGTAACAAATCTTTAAGCCTTTGTCTGCCCATAGATGATGAATAGCCTCTACATAACTTCTCTGAAGCTGTGTTATCTGATGTATATCCAGATCCTGGAACCACTGGGCATAAATCTATGGATATTGCAGACTCAATGAGACTGACAATACATTACAGCTTAAGATCCAATCTGGTGCGTATACAAAAATTATATGGATTTTTCGCTGTTAGtatgcatgtaaaaaataaatacaattcctgttcttatatatatttgatatttatccATAATAAAGCTAATACAATCGTCGatataaaatgatctaaaatggGCTCTAAAAACCCATTTGGTCTCTCGGTCACCTCGTTCTGTGGGTTGGAGTAGGGAATCTTAAGCGTTTTCATGGCATCTGTCATTGCACACATAGATTGGAAGATGTTCTGAAAAACCAGTTTAGTGTAACTACATCTCTCATTTTCCGAGTATCCGCTTCCATTAATGATCTTCATCTGCTTCATAAACGTCGTCTTTCCGCTTTCTCCCGTGCctaaatgaaagcaaaagtaTCATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247713.1 lncRNA downstream 16440 11490673 ~ 11492960 (-) True LOC122327760
TU224757 lncRNA downstream 19967 11489126 ~ 11489433 (-) False gna11a
TU224752 lncRNA downstream 41876 11466452 ~ 11467524 (-) False gna11a
TU224751 lncRNA downstream 42302 11465908 ~ 11467098 (-) False gna11a
TU224753 lncRNA downstream 43061 11465863 ~ 11466339 (-) False gna11a
TU224767 lncRNA upstream 3889 11522030 ~ 11523422 (-) True G151893
TU224771 lncRNA upstream 9957 11528098 ~ 11530610 (-) True G151896
TU224780 lncRNA upstream 32057 11550198 ~ 11550870 (-) True G151904
TU224804 lncRNA upstream 69520 11587661 ~ 11589923 (-) True G151919
TU224850 lncRNA upstream 275455 11793596 ~ 11794224 (-) False LOC122327290
XM_043223309.1 mRNA downstream 18746 11465852 ~ 11490654 (-) False gna11a
XM_043223311.1 mRNA downstream 18746 11465852 ~ 11490654 (-) True gna11a
XM_043223308.1 mRNA downstream 18748 11465852 ~ 11490652 (-) False gna11a
XM_043223310.1 mRNA downstream 18749 11465852 ~ 11490651 (-) False gna11a
XM_043223336.1 mRNA downstream 44325 11440216 ~ 11465075 (-) True tle5
XM_043223291.1 mRNA upstream 48876 11567017 ~ 11571678 (-) True LOC122327726
XM_043222520.1 mRNA upstream 275432 11793573 ~ 11804698 (-) True LOC122327290
XM_043222517.1 mRNA upstream 286674 11804815 ~ 11815578 (-) True LOC122327288
XM_043222518.1 mRNA upstream 286674 11804815 ~ 11815577 (-) False LOC122327288
XM_043222365.1 mRNA upstream 323447 11841588 ~ 11844852 (-) False LOC122327182
unassigned_transcript_2544 other downstream 160949 11348380 ~ 11348451 (-) True trnaq-uug_21
XR_006247709.1 other downstream 320722 11174143 ~ 11188678 (-) False rex1bd
XR_006247708.1 other downstream 320722 11179704 ~ 11188678 (-) False rex1bd
TU224207 other downstream 1087065 10419127 ~ 10422335 (-) True micos13
XR_006247701.1 other downstream 1187737 10286578 ~ 10321663 (-) False polrmt
TU225293 other upstream 527328 12045469 ~ 12049531 (-) True si:ch211-117l17.6
TU225397 other upstream 624701 12142842 ~ 12145575 (-) True G152276
TU225529 other upstream 1042732 12560873 ~ 12567345 (-) False LOC122328185
TU225672 other upstream 1388008 12906149 ~ 12914226 (-) False cxcl12b
TU225673 other upstream 1388106 12906247 ~ 12914226 (-) False cxcl12b

Expression Profile