RNA id: TU224782


Basic Information

Item Value
RNA id TU224782
length 419
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G151906
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 11551893 ~ 11552311 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atccccaaatcctagtcattttggtttttgtttgtttttgtttgttaccctttaggtgcgaggacgcaccttccgggaggggggggtaatgtcacgttccccggactctgtgtttatgttttcgtttcgtgccatgtgctccctgtgccctgccttccctctgtgttaattatgttattgtcatcagctgtgtctcgtcaattaccctgtgtatttaagtcctgtgttttgagttctgtttgtccgagcgtcaaggtccctacccgatgttGATACCCCTGTGTTgattctgcctgcctgcctgcctgcctgttctacctgcctgccttttttgtatctttgttaccattttgaaattaaatccatttacgtttattttacgTGTCGTGCACTtcgtcccgcgaaagcgcaaccgtgac

Function

GO:

id name namespace
GO:0044428 obsolete nuclear part cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224781 lncRNA upstream 104 11551466 ~ 11551789 (+) True G151905
TU224779 lncRNA upstream 1023 11550194 ~ 11550870 (+) True G151903
TU224670 lncRNA upstream 83619 11466417 ~ 11468274 (+) True G151841
TU224669 lncRNA upstream 85559 11465863 ~ 11466334 (+) False G151841
TU224671 lncRNA upstream 85559 11465918 ~ 11466334 (+) False G151841
XR_006247734.1 lncRNA downstream 225172 11777483 ~ 11786711 (+) True LOC122327899
TU224829 lncRNA downstream 274254 11826565 ~ 11835103 (+) False LOC122327134
TU224830 lncRNA downstream 274254 11826565 ~ 11835103 (+) False LOC122327134
TU224834 lncRNA downstream 314771 11867082 ~ 11867541 (+) True G151936
TU224886 lncRNA downstream 440279 11992590 ~ 11992800 (+) True G151972
XM_043223314.1 mRNA upstream 16152 11522004 ~ 11535741 (+) True LOC122327737
XM_043223313.1 mRNA upstream 19792 11522007 ~ 11532101 (+) False LOC122327737
XM_043223315.1 mRNA upstream 38958 11507461 ~ 11512935 (+) True LOC122327738
XM_043223316.1 mRNA upstream 38958 11507468 ~ 11512935 (+) False LOC122327738
XM_043223253.1 mRNA upstream 170156 11353277 ~ 11381737 (+) False tle2a
XM_043223519.1 mRNA downstream 235275 11787586 ~ 11792458 (+) True LOC122327862
XM_043223904.1 mRNA downstream 240239 11792550 ~ 11793165 (+) True LOC122328196
XM_043222519.1 mRNA downstream 270627 11822938 ~ 11825207 (+) True LOC122327289
XM_043222318.1 mRNA downstream 274988 11827299 ~ 11835134 (+) True LOC122327134
XM_043222486.1 mRNA downstream 444909 11997220 ~ 12003856 (+) True b3galt2
XR_006247707.1 other upstream 227953 11318689 ~ 11323940 (+) False mier2
TU224458 other upstream 629965 10919060 ~ 10921928 (+) False si:dkey-172o19.2
TU224353 other upstream 714528 10806052 ~ 10837365 (+) True G151620
TU224351 other upstream 714528 10816135 ~ 10837365 (+) False G151620
XR_006247780.1 other upstream 842783 10709044 ~ 10709110 (+) True LOC122328232
TU224828 other downstream 270623 11822934 ~ 11824055 (+) False LOC122327289
TU224831 other downstream 275033 11827344 ~ 11833374 (+) False LOC122327134
TU224905 other downstream 458158 12010469 ~ 12268139 (+) True LOC122327127
TU224911 other downstream 496107 12048418 ~ 12263031 (+) False LOC122327127
TU224914 other downstream 686471 12238782 ~ 12265692 (+) False LOC122327127

Expression Profile