RNA id: XM_043222318.1


Basic Information

Item Value
RNA id XM_043222318.1
length 1091
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC122327134
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 11826565 ~ 11835134 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atttttctattgtgttttcaGGACAGGCCTGTCCTTTCGTCCTGCTGGTGTTGACCGGTCAGTTGGAGGATCTTCAGGCAGCTCTGTTGGCGTCTCTCATGGACGTAATTGGCCTGCGTCATGGTCAGAGCTGTTTGAGTAACTCTCTGTCCTGGTCAGATGGACTAAATCAGCTTCATTGCCACCTACGGGGCGAACATCTTATGTCCCTGCTGGGACAAAATGTGAAGGATGCTGGACAGGACACGGCAAAGGAGAACTCAAGTGGGACCAGCAGCTGGCTAAGAGAGCCAACAGTCAGAAGACCCCTGCGGAGCCACagccggcaacagagctcaCCTCGCAGGCTGATCCAGTACCCGCCTCCCCCCTCCAAGGGCGGCATTACCGTGACAACCGAGGACCTGGAGTGCCTCAAGGATGGCGAGTTTCTCAACGACGTCATCATCGACTTCTACCTCAAGTACCTTCTGTTGGAAAGAGCTGACAAAGATGTGGCCGAAAGATCTCACATCTTCAGCAGCTTCTTCTACAAGCAACTGACTCGGAAGAACGCTAGCTGTCCTGAAGACTCTGGAAGCACGCCCTCTCAGGTCAGAAGGCATCAGCGTGTGAGGACATGGACACGTCATGTAGACATCTTTGACAAAGACTTCCTGTTTGTGCCAGTCAATCAAGAAGCTCATTGGTACCTCGTGGTGATCTGTTTCCCCGGGTTAGAAGTGCCACGGTTTGTGAGGAGGGACGGACTCGAGGGAGACTCTGTGCAGGGTGATGGAAGTGAAGGTTTGGGTGAGTCTGAGGCAGCGGTCCAGGAAGAGAATAGATCCAACAGTGACGAGAACAAAGATGACAGTCATATAAAGTCGAACGTGTCTCATCTTCCTAACTGTACAGAAAATACCTGCAAGAGACCTATCGTATGTAaaagACCATGTATTCTCATCATGGATTCCCTGAAGTTGTCGGTTCACGAACGTATCTTCAAACTCTTGCGAGAGTGAGTatcacattacattacattacattaagttGCACTGTTGTTTTGctctctttaatattattgttataactATTTGTTTACTAgtatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247734.1 lncRNA upstream 40588 11777483 ~ 11786711 (+) True LOC122327899
TU224782 lncRNA upstream 274988 11551893 ~ 11552311 (+) True G151906
TU224781 lncRNA upstream 275510 11551466 ~ 11551789 (+) True G151905
TU224779 lncRNA upstream 276429 11550194 ~ 11550870 (+) True G151903
TU224670 lncRNA upstream 359025 11466417 ~ 11468274 (+) True G151841
TU224834 lncRNA downstream 31948 11867082 ~ 11867541 (+) True G151936
TU224886 lncRNA downstream 157456 11992590 ~ 11992800 (+) True G151972
TU224891 lncRNA downstream 171134 12006268 ~ 12006582 (+) True G151976
TU224954 lncRNA downstream 210718 12045852 ~ 12048265 (+) True G151999
TU224904 lncRNA downstream 213284 12048418 ~ 12249985 (+) False LOC122327127
XM_043222519.1 mRNA upstream 2092 11822938 ~ 11825207 (+) True LOC122327289
XM_043223904.1 mRNA upstream 34134 11792550 ~ 11793165 (+) True LOC122328196
XM_043223519.1 mRNA upstream 34841 11787586 ~ 11792458 (+) True LOC122327862
XM_043223314.1 mRNA upstream 291558 11522004 ~ 11535741 (+) True LOC122327737
XM_043223313.1 mRNA upstream 295198 11522007 ~ 11532101 (+) False LOC122327737
XM_043222486.1 mRNA downstream 162086 11997220 ~ 12003856 (+) True b3galt2
XM_043222488.1 mRNA downstream 162086 11997220 ~ 12003856 (+) False b3galt2
XM_043223501.1 mRNA downstream 184108 12019242 ~ 12021636 (+) False glrx2
XM_043223504.1 mRNA downstream 184125 12019259 ~ 12021636 (+) False glrx2
XM_043223503.1 mRNA downstream 184220 12019354 ~ 12021636 (+) False glrx2
TU224828 other upstream 3244 11822934 ~ 11824055 (+) False LOC122327289
XR_006247707.1 other upstream 503359 11318689 ~ 11323940 (+) False mier2
TU224458 other upstream 905371 10919060 ~ 10921928 (+) False si:dkey-172o19.2
TU224353 other upstream 989934 10806052 ~ 10837365 (+) True G151620
TU224351 other upstream 989934 10816135 ~ 10837365 (+) False G151620
TU224905 other downstream 175335 12010469 ~ 12268139 (+) True LOC122327127
TU224911 other downstream 213284 12048418 ~ 12263031 (+) False LOC122327127
TU224914 other downstream 403648 12238782 ~ 12265692 (+) False LOC122327127
TU225002 other downstream 458266 12293400 ~ 12294717 (+) True G152032
TU225014 other downstream 510072 12345206 ~ 12345750 (+) True G152043

Expression Profile