RNA id: TU224903


Basic Information

Item Value
RNA id TU224903
length 335
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id LOC122327127
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 12010469 ~ 12276608 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATCAGAAAGGTGTTCTCTGACACAGCACTGAGGTGAACCTTGCTGCTGACTTTTATACCTGCTCTGGGGCAAATACCTTTCCAACCACACCATTGGCATACTCAAACTTGATGGGAATCTGAAGAATGTTGAGGATACCTCTGTGCAAGTTCAGTACAGTAGGGGAGACTGCTTCTGGGGCAAATACCTTTCCAACCACACCATTGGCATACTCAAACTTGATGGGAATCTGAAGCTGAGCAGCCAGTGCCGCAGTGAGCTTAGAGGCAGGAACAAATGGATCCTTGGGCCAAATGCCAGCATACTCATGGATTAGAGGCTCTGTGAGCTGTAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224982 lncRNA upstream 1833 12239108 ~ 12239444 (+) True G152016
TU224893 lncRNA upstream 5281 12161655 ~ 12235996 (+) False LOC122327127
TU224921 lncRNA upstream 5281 12161655 ~ 12235996 (+) False LOC122327127
TU224920 lncRNA upstream 23071 12205824 ~ 12218206 (+) False LOC122327127
TU224981 lncRNA upstream 24431 12216447 ~ 12216846 (+) True G152015
TU224994 lncRNA downstream 39059 12306554 ~ 12331845 (+) True G152028
TU225052 lncRNA downstream 159261 12426756 ~ 12426972 (+) True G152068
TU225093 lncRNA downstream 311787 12579282 ~ 12617819 (+) True G152095
TU225094 lncRNA downstream 311787 12579282 ~ 12580339 (+) False G152095
TU225089 lncRNA downstream 313344 12580839 ~ 12620676 (+) True G152092
XM_043222310.1 mRNA upstream 44698 12189240 ~ 12196579 (+) False LOC122327127
XM_043222311.1 mRNA upstream 44698 12189240 ~ 12196579 (+) False LOC122327127
XM_043222287.1 mRNA upstream 52271 12175687 ~ 12189006 (+) True LOC122327107
XM_043223476.1 mRNA downstream 96840 12364335 ~ 12373157 (+) True dzank1
XM_043223562.1 mRNA downstream 118495 12385990 ~ 12397446 (+) True rrbp1b
XM_043223564.1 mRNA downstream 118495 12385990 ~ 12397446 (+) False rrbp1b
XM_043223780.1 mRNA downstream 130825 12398320 ~ 12408232 (+) True aars2
XM_043223781.1 mRNA downstream 140866 12408361 ~ 12411841 (+) True LOC122328076
TU224831 other upstream 407903 11827344 ~ 11833374 (+) False LOC122327134
TU224828 other upstream 417222 11822934 ~ 11824055 (+) False LOC122327289
XR_006247707.1 other upstream 917337 11318689 ~ 11323940 (+) False mier2
TU224458 other upstream 1319349 10919060 ~ 10921928 (+) False si:dkey-172o19.2
TU224351 other upstream 1403912 10816135 ~ 10837365 (+) False G151620
TU225002 other downstream 25905 12293400 ~ 12294717 (+) True G152032
TU225014 other downstream 77711 12345206 ~ 12345750 (+) True G152043
TU225015 other downstream 77711 12345206 ~ 12345750 (+) False G152043
TU225049 other downstream 141811 12409306 ~ 12423922 (+) True G152065
TU225046 other downstream 147077 12414572 ~ 12423922 (+) False G152065

Expression Profile