RNA id: TU224925


Basic Information

Item Value
RNA id TU224925
length 3010
lncRNA type read_through
GC content 0.42
exon number 16
gene id LOC122327127
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 12010469 ~ 12276608 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cttttttttttttttttttttttttttttttttttttttttttttgtttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttTTAACTTGCATGGTGTTTATTAGTGTTGCTTGCATCACAGCAGTGgtcaaatttaattaaactgtcAAAAACCAATCAATTACATGTGAATACAGCTTACatgtgaataatttttttatgtaattattcacattttattcttcCTTGATATGTTTGTGGATCCAGGAGAGAATGTCCTCATCAACTTGGATGGAAAGAGATCCGTCTGGATTAACGGGAATGGCGAAGGGGAGATGAATACCCATTCTTGACAGTGTCCTCTGGAATCCTGGCAATGACATTCAAAGACCTCTGAGTTGGCAAGGCTGCAGTAAGTTCAATCTCTTTCTCACTGTTAGTTGCTCTTTCGAGTCTGAATCCCGCCTGATAAGCCGCCATAGAGATGTGTTTGTTGCTCTTTCGAGTCTGAATCCCGCCTGATAAGCCGCCATAGAGATGTGTTTGGACATtttttagCATAGGTGGTGACAATAATGGGCAGTCTCTCCCATTCCAGCTCTAAACGTGCAGCAGGGAATTCACCCAGTACACCAGCCTCAGCTTTAGCAGTGATTGCATACTGCTGGCACTCTGGACCCCAAGCAAACTTGGCCTGACAAACAGATTTATGGTTAATTATGGCTTGAGAAAGActtattcacaattttttttttaaatcacacttCCAGTCTTACAGTCACTTTGTGCTTGCTCAGCAGAGCACCATCAACACAGATCTTCTGGTTGTCATTTTCAGCGAGGGAAGAAACAACAAGTTGCACTCTTGCAGTTGGTCTGTCAAAGTAAGCAGCAAGTTGGTAGCCCAGCAGTTTGTGGTCAACTCTCACAGCAGGGAATTCACCCAGTACACCAGCCTCAGCTTTAGCAGTGATTGCATACTGCTGGCACTCTGGACCCCAAGCAAACTTGCAGTCACTTTGTGCTTGCTCAGCAGAGCACCATCAACACAGATCTTCTGGTTGTCATTTTCAGCGAGGGAAGAAACAACAAGTTGAACTCTTGCAGTTGGTCTGTCAAAGTAAGCAGCAAGTTGGTAGCCCAGCAGTTTGTGGTCAACTCTCACAGCACGGGCAATGACAGCAAAAACAGGTGGTGACAATAATGGGCAGCCTCTCCCATTCCAGCTCTAAACGTGCAGCAGGGAATTCACCCAGTACACCAGCCTCAGCTTTAGCAGTGATTGCATACTGCTGGCACTCTGGACCCCAAGCAAACTTGCAGTCACTTTGTGCTTGCTCAGCAGAGCACCATCAACACAGATCTTCTGGTTGTCATTTTCAGCGAGGGAAGAAACAACAAGTTGCACTCTTGCAGTTGGTCTGTCAAAGTAAGCAGCAAGTTGGTAGCCCAGCAGTTTGTGGTCAACTCTCACAGCACGGGCAATGACAGCAAAAACAGGTGGAACTGTATTTCCAAGGAACTTGGCCTGTAAACATAAAccatacaaattttaaatgtcataCTTTCATTTGGCGTTTTGTGTggttattattaaacaaatgccACTGATTCACCTGTTTCTGGATACGCTCAAAGCTAGATCCAGAACTTCCACTGCTAACTGCCTTTGAGGCTCCATGGGTTGCCAAGTACTGCAAGCAAAGTAGTGTTATGGACACAGATTTTTGATAATCTAAAGCCAATATATTGTTaccaatattattttaagtagttaCTCGATCTTTGTGGAATTTCCTGAAAGGCTCCATGATGGTGGCAGTCTGAAAATTCATACAAAATGATTTAGTGAGAATTAATATACatgcttataaaacatacattggTTATTTAAGCAATACATGTCATTCCTTGTCCTCACCTTAGACATGCGAGAGCTAGACATGGAGGAGCTtgaactgctgctgctgctgctgctgctacggctgctgctgctgcttttgcTTTCAGAAGAGACGGGTCTGTTTTTATCTTCAGTCTCCAGGATTTCCTTCAGTTTCAACAGGAAAGCCTTTCCTTCTGGAGACTCCTCATCAATGAGACTGATTTGCTTAAGAAGCCTCTCAGCAGCTCTAGGACCAACTTGAACTTCAAGCTCCAGTCTTTCAACAGCAGGAAGAGCATCCAAAATCCAGCGCCtaacaaatgtattgttttaagtAGAATATTTATAAGATTTCTCTTTAACCATAAGCTGCTGATGTTTTTCCCCCAAAATTGTACCTGTAAACTGGTTCATTCTTGAACTGAGCCCAGACAGCCTCAAAGTTCTCCAAGGTGGCAGCACGCAGGAGCTGGACGAGCTGAAGAAACTTAAGTGGTGCATCATCGTGGACCATGGCCACATTATTTACAACCAAGTGCTTCAGGACCTCCACATACCTGTGCTTTTGGATCACTGATCTTCATGAGTTGAATGGGAATCTGATGAATCTCAGTTGCAAACTCATACTGCAGGGATCCACGGGCCAAGTAATCAGCTTTGATTGGAACAACAGGGGTCTTTTCATTCTCTAAAAATTCCAAGGTTTGTTTGCTTCCATCTGGGCAGCACCATGAATCTCACTGAAGGGTGAGAACTGATGCACTTCCTCAACTGTTGCCTCAGCAAGCAGAGCACCAGTGGCAGCGGGTTTCATGATGTAGTTGTAAGTTGCAGTTTCAATCAGACTCTTGATCCTCTGTTGAGAGACAGGTAAGtatccattttatttatatttggtccatgtattatttaaaaaatttaagcCCATGGTTGTCTTTTTCATTACCTTTGTGCATTCCACACATTTTTCAGCCAGTCTTAAGCCAGTGTCCTTTATAATTCTCTCCTGGCAGTGCTTCAGATCCTTAGACTTGGTGACAGTAATGTGTTTGGTTTTTGGATCCTCACTGATGACATAGTGAGTCCTGCACACTCCCTGAGATCCAGCCTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224954 lncRNA upstream 153 12045852 ~ 12048265 (+) True G151999
TU224891 lncRNA upstream 41836 12006268 ~ 12006582 (+) True G151976
TU224886 lncRNA upstream 55618 11992590 ~ 11992800 (+) True G151972
TU224834 lncRNA upstream 180877 11867082 ~ 11867541 (+) True G151936
TU224830 lncRNA upstream 213315 11826565 ~ 11835103 (+) False LOC122327134
TU224994 lncRNA downstream 39388 12306554 ~ 12331845 (+) True G152028
TU225052 lncRNA downstream 159590 12426756 ~ 12426972 (+) True G152068
TU225093 lncRNA downstream 312116 12579282 ~ 12617819 (+) True G152095
TU225094 lncRNA downstream 312116 12579282 ~ 12580339 (+) False G152095
TU225089 lncRNA downstream 313673 12580839 ~ 12620676 (+) True G152092
XM_043223499.1 mRNA upstream 21666 12022117 ~ 12026752 (+) True uchl5
XM_043223504.1 mRNA upstream 26782 12019259 ~ 12021636 (+) False glrx2
XM_043223476.1 mRNA downstream 97169 12364335 ~ 12373157 (+) True dzank1
XM_043223562.1 mRNA downstream 118824 12385990 ~ 12397446 (+) True rrbp1b
XM_043223564.1 mRNA downstream 118824 12385990 ~ 12397446 (+) False rrbp1b
XM_043223780.1 mRNA downstream 131154 12398320 ~ 12408232 (+) True aars2
XM_043223781.1 mRNA downstream 141195 12408361 ~ 12411841 (+) True LOC122328076
TU224831 other upstream 215044 11827344 ~ 11833374 (+) False LOC122327134
TU224828 other upstream 224363 11822934 ~ 11824055 (+) False LOC122327289
XR_006247707.1 other upstream 724478 11318689 ~ 11323940 (+) False mier2
TU224458 other upstream 1126490 10919060 ~ 10921928 (+) False si:dkey-172o19.2
TU224351 other upstream 1211053 10816135 ~ 10837365 (+) False G151620
TU225002 other downstream 26234 12293400 ~ 12294717 (+) True G152032
TU225014 other downstream 78040 12345206 ~ 12345750 (+) True G152043
TU225015 other downstream 78040 12345206 ~ 12345750 (+) False G152043
TU225049 other downstream 142140 12409306 ~ 12423922 (+) True G152065
TU225046 other downstream 147406 12414572 ~ 12423922 (+) False G152065

Expression Profile