RNA id: TU224954


Basic Information

Item Value
RNA id TU224954
length 2256
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G151999
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 12045852 ~ 12048265 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

agtcagaatgtttattttctattgCTCCCCAGCGATGGGAAGCATCCGAGACAAAGCTTCGGGTCTCCTGATGTTTGAAAGAGCGATGCGATTTTCTTCTGGTAGTATTTATAGCATCAGCCTCATATTTTAATGATCAACTGAAAATCACCTGTGAAAAAAGCCTCGTGAAAATCAAACACTGCAGTAAAAAAGCATCTTAATCCAATAAAcatggtattttttattttcaatctgACCCGGATAGATTTTTCCAGTGGTCCTGAAACAGTGGTGTCTTTATTATAGAATTACCTTCCCCAAGAAGGACATATGCTGAAGGAGATCTAGCATGAACCAGATGACCGTTGACATTCACCGTGTTGGTGGGATTTTAGGTTAATCAAACATAGTTATTCTTAGATGCTCTAAATTGCCTTTTTAAGATATGAATCTCAGGAAGAAAGTCATTGTTATAGTAGGGTCAAGCGCTGACACggattataattgtattataagGCAGTGTCTGTCACTTAAGGCTTGTCTTTGCATCAATTAGCTCGGGTCGGACATGTGACCAAAACACAGTTCCTCACAGACTGTGGAAAACCGGCTTCTCAGAGCTGGTTTTCTCCTCAAAATTAGTCATTGTCCACTGACTTTCTAAGTAAAGCTCATCTTTAGTTCACAGTATGTTTGTGTGCTTCATAAAGATGGCATGAcgttctttctgtctttgaatGTATAGTAaatgccttagaaaaaaaaaaaaaaaaaaaaaaactaacaaggaAAATTGatttatatgtgtttttccTAGTCGGTTGTGACGTTAAATGGAAAACAAGTGAAGATGTCTATTAAAGTCTTATTTTAaggtagattaaaaaaaaagaagatggataaaaaaaaaaatagatttcaatTTGAACATTTTCTCAATAGATTTCCAATTAAAATGCACAAGGTTTTGCTTCAACTCTGTTACTGACATATTTTCTGATTTAGTGATAAACATTCCatctattaaatattcattggaatttttataaacataaagaaaattgttaatagatagatagatagatagatagatagatagatagatgttttaattaataaactattctatttatttcaaattatatttttaaagaaaattgaCTTAAGGTTATGTGTCAGCCCTGTTACTATCATATTTTccctgttttattaataaacttcTGTTAGTTTGCAGTAatgtctatatgtatatatgattgACTTTAGGTCATGCATCAACCCTGTTACCTtcatatttgccattttagtAATAaactaattgtttattttaaaaagtacaaaagtcaCAAGGATGTATTTGAGTTAATATCCTTTTTTATCActattttatctcatttttaGTAGGGGATTTAGTAGgaattctctttttttgttccttaataattgtctttttaatgACACGTTTGTAGTTTCGTGTTCTTGTGTGTCAAACTGAACTGTAAATGTCAACCCTGTTATCTTTCCGGTAgcttaatttttacatttatttatctgaatgtttaaagtaaaagtgaatgtttaaattCTGCAACTGGGCTCATGTAGTCTCTTATAAAATAgattataacatatataagattataacaaaattatagattataacaaaaaaaaagtcaactaaCAGGATATCTTGAGGTGCCGCAATACAATTTCTCAACACTTAAACACGTGTGTGATCAAATCTAACAGAAATCTATTTTAAAGACAAACGTTTATAGAAAAGTCCCCCATTTCACATAACGGTTCACCCCATTTCGTAAACAGTGGAAACCATTTAATGTACCTTCATTCTTGATCATATCCTGTAACATTGACacctttatttttctcatttctcattcattttatcACTCAAACCAATGAAGCTGAGCTTCTGCACACCACATACTTTCTGTTCTCCTCTGTCATTTCCTCCAAACCACGTGCATATGTCCTCTTTCTTTGCGGTGGCTCATTAAGAGACATTTTTCCAGTGAATTAGTAGTCACTGGCTGGTCTACACTGGGTTCCTGGCTGCGTTCCTCAGGTTCTGATAGGCCTCAGATTTGAGGAACCTTGGGCAGGAGTCTTTCTCCATCAATCTGTATATATGCATCTCGGCTTCATCAAAACAAGTGAGGTCAGGCTTCACCAAAGATCTCTTGATCTTCTCACGGGTGTGATGGTCAACATTGACCTGCAAATTTGAAGTAATTAAGTAATTTGAAGTTAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224891 lncRNA upstream 39270 12006268 ~ 12006582 (+) True G151976
TU224886 lncRNA upstream 53052 11992590 ~ 11992800 (+) True G151972
TU224834 lncRNA upstream 178311 11867082 ~ 11867541 (+) True G151936
TU224829 lncRNA upstream 210749 11826565 ~ 11835103 (+) False LOC122327134
TU224830 lncRNA upstream 210749 11826565 ~ 11835103 (+) False LOC122327134
TU224904 lncRNA downstream 153 12048418 ~ 12249985 (+) False LOC122327127
TU224906 lncRNA downstream 153 12048418 ~ 12276608 (+) False LOC122327127
TU224925 lncRNA downstream 153 12048418 ~ 12267166 (+) False LOC122327127
TU224893 lncRNA downstream 113390 12161655 ~ 12235996 (+) False LOC122327127
TU224896 lncRNA downstream 113390 12161655 ~ 12263031 (+) False LOC122327127
XM_043223499.1 mRNA upstream 19100 12022117 ~ 12026752 (+) True uchl5
XM_043223501.1 mRNA upstream 24216 12019242 ~ 12021636 (+) False glrx2
XM_043223504.1 mRNA upstream 24216 12019259 ~ 12021636 (+) False glrx2
XM_043223503.1 mRNA upstream 24216 12019354 ~ 12021636 (+) False glrx2
XM_043223502.1 mRNA upstream 24216 12019355 ~ 12021636 (+) False glrx2
XM_043222476.1 mRNA downstream 8555 12056820 ~ 12077871 (+) True ccdc50a
XM_043222477.1 mRNA downstream 8566 12056831 ~ 12077871 (+) False ccdc50a
XM_043222359.1 mRNA downstream 34156 12082421 ~ 12084561 (+) True LOC122327174
XM_043223758.1 mRNA downstream 38900 12087165 ~ 12122997 (+) True p3h2
XM_043222282.1 mRNA downstream 77228 12125493 ~ 12130315 (+) False LOC122327103
TU224831 other upstream 212478 11827344 ~ 11833374 (+) False LOC122327134
TU224828 other upstream 221797 11822934 ~ 11824055 (+) False LOC122327289
XR_006247707.1 other upstream 721912 11318689 ~ 11323940 (+) False mier2
TU224458 other upstream 1123924 10919060 ~ 10921928 (+) False si:dkey-172o19.2
TU224351 other upstream 1208487 10816135 ~ 10837365 (+) False G151620
TU224911 other downstream 153 12048418 ~ 12263031 (+) False LOC122327127
TU224914 other downstream 190517 12238782 ~ 12265692 (+) False LOC122327127
TU225002 other downstream 245135 12293400 ~ 12294717 (+) True G152032
TU225014 other downstream 296941 12345206 ~ 12345750 (+) True G152043
TU225015 other downstream 296941 12345206 ~ 12345750 (+) False G152043

Expression Profile