RNA id: TU224982


Basic Information

Item Value
RNA id TU224982
length 257
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G152016
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 12239108 ~ 12239444 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAGTTTGGGCTCTTTCTTAGCAATGTTCCTCAGGGACAAGATAGCATCAACCTGAACCCTAAGGGGCAGAGAATTAGCTGCAGTTCTCAGTCCAGGCAGGAGCTTCATGATGGGTTTAAGACTAGCAGGGTGACCAGCATTGCCCAGAACTTTCAAAGCCAGAGTGATTTCAGGAATGTCATTCTTGGAAGTTGCTTCTGCAGCAATATCATGGATGTACCCTGAGAAGCTCAGCAGAGCAAGTAGAAACTTCAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224893 lncRNA upstream 3112 12161655 ~ 12235996 (+) False LOC122327127
TU224921 lncRNA upstream 3112 12161655 ~ 12235996 (+) False LOC122327127
TU224920 lncRNA upstream 20902 12205824 ~ 12218206 (+) False LOC122327127
TU224981 lncRNA upstream 22262 12216447 ~ 12216846 (+) True G152015
TU224975 lncRNA upstream 50184 12186267 ~ 12188924 (+) False LOC122327107
TU224903 lncRNA downstream 1833 12241277 ~ 12267495 (+) False LOC122327127
TU224918 lncRNA downstream 11292 12250736 ~ 12251346 (+) False LOC122327127
TU224932 lncRNA downstream 13397 12252841 ~ 12253286 (+) True G151983
TU224994 lncRNA downstream 67110 12306554 ~ 12331845 (+) True G152028
TU225052 lncRNA downstream 187312 12426756 ~ 12426972 (+) True G152068
XM_043222310.1 mRNA upstream 42529 12189240 ~ 12196579 (+) False LOC122327127
XM_043222311.1 mRNA upstream 42529 12189240 ~ 12196579 (+) False LOC122327127
XM_043222287.1 mRNA upstream 50102 12175687 ~ 12189006 (+) True LOC122327107
XM_043223476.1 mRNA downstream 124891 12364335 ~ 12373157 (+) True dzank1
XM_043223562.1 mRNA downstream 146546 12385990 ~ 12397446 (+) True rrbp1b
XM_043223564.1 mRNA downstream 146546 12385990 ~ 12397446 (+) False rrbp1b
XM_043223780.1 mRNA downstream 158876 12398320 ~ 12408232 (+) True aars2
XM_043223781.1 mRNA downstream 168917 12408361 ~ 12411841 (+) True LOC122328076
TU224831 other upstream 405734 11827344 ~ 11833374 (+) False LOC122327134
TU224828 other upstream 415053 11822934 ~ 11824055 (+) False LOC122327289
XR_006247707.1 other upstream 915168 11318689 ~ 11323940 (+) False mier2
TU224458 other upstream 1317180 10919060 ~ 10921928 (+) False si:dkey-172o19.2
TU224351 other upstream 1401743 10816135 ~ 10837365 (+) False G151620
TU225002 other downstream 53956 12293400 ~ 12294717 (+) True G152032
TU225014 other downstream 105762 12345206 ~ 12345750 (+) True G152043
TU225015 other downstream 105762 12345206 ~ 12345750 (+) False G152043
TU225049 other downstream 169862 12409306 ~ 12423922 (+) True G152065
TU225046 other downstream 175128 12414572 ~ 12423922 (+) False G152065

Expression Profile