RNA id: TU225093


Basic Information

Item Value
RNA id TU225093
length 383
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G152095
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 12579282 ~ 12617819 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAAGTCCTGTTAAACTGACCGTGAGAGCAGCGACACACGTTGTCTTTGCAGATTTGATCAAGCTGCTCTTTGTCTTCTGGAGGAGAGTAGAACCTGCTACAGCGTTacCTTTGTTGTAGTACTGGTACACTGTGACAGTGGAGGGCTGAAGGAGACCCACTTTAAATTTCTGATGCAGTCTGAATGATATCGTGTCTGTCTGAGTACTGGATACCTTTCCGGGACGTacagacaaagacaaatattCCATGATGCCTTCATTTACGTCATGATAAACTATATGTTAGCTTACCCTAAAAAGGTGAATTATGAGGGATCCTCTGTCGCTCAGGTTGTCCACCACTTGAAAGTTGTTGATGTAGCGATCCACTGAATTTGAGAGC

Function

GO:

id name namespace
GO:0050878 regulation of body fluid levels biological_process
GO:0001775 cell activation biological_process
GO:0030168 platelet activation biological_process
GO:0007596 blood coagulation biological_process
GO:0007599 hemostasis biological_process
GO:0050817 coagulation biological_process
GO:0042060 wound healing biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU225052 lncRNA upstream 152310 12426756 ~ 12426972 (+) True G152068
TU224994 lncRNA upstream 247437 12306554 ~ 12331845 (+) True G152028
TU224903 lncRNA upstream 311787 12241277 ~ 12267495 (+) False LOC122327127
TU224932 lncRNA upstream 325996 12252841 ~ 12253286 (+) True G151983
TU224918 lncRNA upstream 327936 12250736 ~ 12251346 (+) False LOC122327127
TU225118 lncRNA downstream 24238 12642057 ~ 12642495 (+) True G152115
TU225126 lncRNA downstream 38130 12655949 ~ 12656429 (+) True G152122
TU225153 lncRNA downstream 129762 12747581 ~ 12747956 (+) True G152140
TU225156 lncRNA downstream 136527 12754346 ~ 12793226 (+) True G152142
TU225195 lncRNA downstream 283451 12901270 ~ 12970358 (+) False G152161
XM_043222265.1 mRNA upstream 36598 12536097 ~ 12542684 (+) False dnaja3b
XM_043222266.1 mRNA upstream 36598 12536097 ~ 12542684 (+) True dnaja3b
XM_043223457.1 mRNA upstream 75305 12485205 ~ 12503977 (+) True vasna
XM_043223942.1 mRNA upstream 100347 12473253 ~ 12478935 (+) True LOC122328225
XM_043223486.1 mRNA upstream 107947 12469118 ~ 12471335 (+) True LOC122327840
XM_043222259.1 mRNA downstream 27362 12645181 ~ 12650074 (+) True LOC122327087
XM_043223532.1 mRNA downstream 40245 12658064 ~ 12658715 (+) True mrps28
XM_043223525.1 mRNA downstream 71105 12688924 ~ 12699036 (+) True LOC122327869
XM_043223524.1 mRNA downstream 95476 12713295 ~ 12722332 (+) True LOC122327868
XM_043223935.1 mRNA downstream 105043 12722862 ~ 12732856 (+) True capn2l
TU225049 other upstream 155360 12409306 ~ 12423922 (+) True G152065
TU225046 other upstream 155360 12414572 ~ 12423922 (+) False G152065
TU225014 other upstream 233532 12345206 ~ 12345750 (+) True G152043
TU225015 other upstream 233532 12345206 ~ 12345750 (+) False G152043
TU225002 other upstream 284565 12293400 ~ 12294717 (+) True G152032
XR_006247603.1 other downstream 489687 13107506 ~ 13112733 (+) True LOC122327162
XR_006247605.1 other downstream 491876 13109695 ~ 13112733 (+) False LOC122327162
XR_006247602.1 other downstream 491882 13109701 ~ 13112733 (+) False LOC122327162
XR_006247604.1 other downstream 491991 13109810 ~ 13112733 (+) False LOC122327162
XR_006247606.1 other downstream 491996 13109815 ~ 13112733 (+) False LOC122327162

Expression Profile