RNA id: TU225672


Basic Information

Item Value
RNA id TU225672
length 2341
RNA type TUCP
GC content 0.41
exon number 4
gene id cxcl12b
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 12906133 ~ 12914243 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCTGAGACGCCACACTGAGCTCTGGAAGCTAGCTGTGACGGAcaaaagccacacacacacacacacacttggcaTGGATAGCAAAGTCCTAGCGCTGGTGGCCCTGCTGACGCTCGCCATATGGAGCCCAGAGACCGACGCTAAACCCATCAGTCTGGTGGAGAGATGCTGGTGCCGATCCACTCTCAACACCGTCCCGCAGAGGAGCATCCGTGAGATCAAGTTCCTCCACACACCCAGCTGCCCCTTCCAAGTCATTGCCAAGCTGAAGAACAACAGAGAGGTCTGCATCAACCCCAAGACCAAATGGCTGCAGCAGTATCTAAAGAATGCCATTAGCAAAATAAAGAAGAAGCGCACAAAGTAAACGGCTGAGGATGTGCGAGGAGGACCACCGTGCATCTCTGACCAAAGAGGCACCGGTCCtctcctctcgctctctttGATCACTCCTCCTCTTTCTGGACTGCTTGCACAAACAGCACTTCACCTGAACCTGGCTCTCAAGCTTCCAGACAGCCTGCAGCTCACCAAAACACAAGCCAACGCCTTCCTCCCGACGCACCGCTTCTGAGGCTGCGATCACTGACTGAATCAAGCCGCTGAATGTAACCGTGAACGTTTGAATGAGAAGGCGAGAGAGATATCTAAAGGACAGTAAACATGAGAGTTTGTGTCATAGTTGCGAGGGACGTCTAACCTTTAGGATAGTTTGGGATTAATAAGGGACATAAGCAAGTGAAAATGAAGCAGACATTTAAACCTGCCCCGCTCAAGCTTtcactttttgttattttgctgcTCATCGCTTAGTAGAAGTGTTTAAAAGCTCACCAGCACACATGAATGATCCGGCATGCTAACGCTAGCTCTGTTCCAAATCCTAGCGAACCGCCTGCTGAACAAAAAACTGCCGTACAAGCAGTTTTcgctcagaaattgctagtagatattacaataaattacgATAAAATTGCGATTGTACAtgaaattttgaagtagaaaagcCTGAAATAGTCATTTCTTTTAagaccttcaaaaaaaaattgtggtgCAAAAAGCTGCAAAATAAATCGCCTTATTAAAATTCAGGATAGCGTCATTGTATTTAACACATAaagcaatcccagaatgcactgcgaAAAGTTTAGTTAAAAACCCAAGATGGCAGATGTGAAAAGCCAATCATAAAAATacttacatttcattaaatacccaataaaaactattttcctcagtatttttatgcttaaacaGGACCTTGGTCATGTTAAATGCCATACTGAATTTAGGTTTTTGTCTACCGAACATTTTATTAATCGTTTCTATAGCTAAACATTCAGTATGTAGTTAAAAACTGTATAATCCATTGTACTCCTATATCCCTCACAGCCTCGATTTCATTccaggcaaaaaataaaatatgacgcTAACCTACTGTAGGGtctgttagcttagcaacaagCTAACGCCAGTCTCTTTGGTTAAGAGTTAAAGATGTCAAAACATGTACTTATTTACTTCCACGACGATTATAGCGTGGACTCGGAAAACAGCAGATAGTAGTGCACTTAGAAGTGCACTGTGCAGGCGGCAGATAGCAATGCTTTGGAACAGAGAAAGGTTTGGGCTGCTAATACAGGAAGCAGAATCATAGTTTCCTGCCTTCCGCTTCCTCTCTGCTACACGTGCGTAGCAAGCACCAGACACTGAATTTCAAGAAATATGCAGTTTAAAGCAGATATGCTGTATGTATAAAGCAGGTGCCGTTAATGCAATCACGCCACGGCAGCTTAAAACTTCTGCTCATGTGCATCGAGCAACATGACTCAGGCCTTAATTAACATCATTTGCATACAGATCCTGTGTCATACTGGTTGTGATTCGGATCCAACAGGACCGAGcaacatgtaaatattctccAGCACTAAATGGCTGTCAATAAATGGGTTGAACAGGGaccaaaaactgaaaaatgcaagCGATTTGTAGGCTAAATTAATATTGCTTTATGTACTCCATAtgtatcagtttttttttgttgttttttagccACAGAATTAAAGGATGTTACTGTGATTTTGGTTTTCATGGCATTAACACATTTATCTAACCTTTTTTATCTGTTCTGATAATGTTTTGACTCAAATGCCCAATTGCTGTAACGTTTTTGAGccacttttaaaaagtatagtttgtaatgtaatgatttatttttgtattttgtattgatcaacatgaataaaaacacaacagtacAATATGAAGGAATTTCTAGAGTATTTCACAGTTGCAGTTATAAAAAGGTATACAAcgtctatatacatatattaataaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU225597 lncRNA downstream 157709 12748222 ~ 12748440 (-) True G152386
TU225573 lncRNA downstream 222764 12683090 ~ 12683385 (-) True G152363
TU225514 lncRNA downstream 361022 12544901 ~ 12545127 (-) True G152351
TU225498 lncRNA downstream 426697 12474768 ~ 12479452 (-) True G152341
TU225496 lncRNA downstream 471193 12434581 ~ 12434956 (-) True G152340
XR_006247716.1 lncRNA upstream 30068 12944294 ~ 12953144 (-) False LOC122327774
XR_006247715.1 lncRNA upstream 30068 12944294 ~ 12953140 (-) False LOC122327774
TU225669 lncRNA upstream 30206 12944432 ~ 12951901 (-) True LOC122327774
TU225691 lncRNA upstream 88147 13002373 ~ 13002884 (-) True G152454
TU225701 lncRNA upstream 123153 13037379 ~ 13037599 (-) True G152463
XM_043223170.1 mRNA downstream 22953 12876814 ~ 12883196 (-) True hmox2a
XM_043223169.1 mRNA downstream 22957 12876814 ~ 12883192 (-) False hmox2a
XM_043223171.1 mRNA downstream 22960 12876814 ~ 12883189 (-) False hmox2a
XM_043223167.1 mRNA downstream 33119 12867696 ~ 12873030 (-) True gde1
XM_043223182.1 mRNA downstream 38583 12862829 ~ 12867566 (-) True mcrip2
XM_043223362.1 mRNA upstream 42230 12956456 ~ 12966143 (-) True xpnpep1
XM_043223533.1 mRNA upstream 54775 12969001 ~ 12977687 (-) True cusr
XM_043222353.1 mRNA upstream 78986 12993212 ~ 12995099 (-) True LOC122327159
XM_043222347.1 mRNA upstream 99655 13013881 ~ 13015666 (-) True LOC122327155
XM_043222356.1 mRNA upstream 103782 13018008 ~ 13022045 (-) True LOC122327163
TU225529 other downstream 338804 12560873 ~ 12567345 (-) False LOC122328185
TU225397 other downstream 760574 12142842 ~ 12145575 (-) True G152276
TU225293 other downstream 856618 12045469 ~ 12049531 (-) True si:ch211-117l17.6
unassigned_transcript_2544 other downstream 1557698 11348380 ~ 11348451 (-) True trnaq-uug_21
XR_006247709.1 other downstream 1717471 11174143 ~ 11188678 (-) False rex1bd
TU225939 other upstream 663575 13577801 ~ 13689607 (-) False LOC122327865
XR_006247594.1 other upstream 911143 13825369 ~ 13829699 (-) False adra2a
XR_006247564.1 other upstream 1483152 14397378 ~ 14425100 (-) False LOC122327056
TU226797 other upstream 2706423 15620649 ~ 15622429 (-) True G153215
XR_006247627.1 other upstream 2936062 15850288 ~ 15852458 (-) True LOC122327278

Expression Profile