RNA id: TU225965


Basic Information

Item Value
RNA id TU225965
length 480
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G152653
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 13848132 ~ 13848611 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCCGATGCACTTAAGATTGCTTGGTTCTACTCGGCACGTAAATGAATAGTTTTGGCCGTTTCGTAAACAACAGTTTATCGATTCGCTAAGATCCGGTTCAAAAGAACGACTCCTTCTCGAATCGCGCGTCGCCAGCGTGCGCGTGAGCGCGCAGCAGCGGTCGTGCTCCGCTGTCTGCTGAACTAACGCTTAGAAaggtgtgtttattttcatttcgcGTTTTATCTGTTGCATCGTCTTTTTCCTTTCCATCATTTCTGCGTCGATTTACGCATGTATTCGTTtgtctatttttaaaagcacacgTTTGTGTGCTGCAAGTGTTGTATGCGCTTTCGCAATCTTGTAAACGCTAACAATCGTGCCAATAAAGCTTTGTTGACTCTGACTCTATGACCATTTTGGGACAAATCACTCTTTTGTTTACTGTACAGACGCATTCCGCACGCGTACTTGGCTTTCGCGGCACCTTTCTTttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU225955 lncRNA upstream 14946 13831303 ~ 13833186 (+) True G152643
TU225956 lncRNA upstream 44851 13802834 ~ 13803281 (+) True G152644
TU225880 lncRNA upstream 158529 13583785 ~ 13689603 (+) True G152585
XR_006247771.1 lncRNA upstream 194622 13653065 ~ 13653510 (+) True LOC122328069
XR_006247595.1 lncRNA upstream 195095 13651501 ~ 13653037 (+) True LOC122327079
TU225966 lncRNA downstream 123 13848734 ~ 13849573 (+) False LOC122327202
XR_006247620.1 lncRNA downstream 524 13849135 ~ 13850960 (+) False LOC122327202
TU225953 lncRNA downstream 1693 13850304 ~ 13852436 (+) True LOC122327202
XR_006247772.1 lncRNA downstream 114513 13963124 ~ 13965812 (+) True LOC122328070
TU226034 lncRNA downstream 144461 13993072 ~ 13999248 (+) True G152707
XM_043222319.1 mRNA upstream 299703 13541190 ~ 13548429 (+) True LOC122327135
XM_043222320.1 mRNA upstream 299703 13541190 ~ 13548429 (+) False LOC122327135
XM_043222321.1 mRNA upstream 299703 13541190 ~ 13548429 (+) False LOC122327135
XM_043223201.1 mRNA upstream 309106 13517128 ~ 13539026 (+) True LOC122327695
XM_043223200.1 mRNA upstream 341303 13502250 ~ 13506829 (+) True baiap2l2b
XM_043222432.1 mRNA downstream 192110 14040721 ~ 14058580 (+) True LOC122327219
XM_043222305.1 mRNA downstream 222865 14071476 ~ 14078374 (+) True kcnip2
XM_043222309.1 mRNA downstream 222865 14071476 ~ 14078374 (+) False kcnip2
XM_043222306.1 mRNA downstream 224842 14073453 ~ 14078374 (+) False kcnip2
XM_043222308.1 mRNA downstream 225184 14073795 ~ 14078374 (+) False kcnip2
TU225879 other upstream 166185 13575738 ~ 13681947 (+) True G152584
TU225846 other upstream 429725 13417464 ~ 13418407 (+) True G152565
TU225829 other upstream 464355 13383153 ~ 13383777 (+) True G152558
XR_006247607.1 other upstream 735399 13109824 ~ 13112733 (+) False LOC122327162
XR_006247779.1 other downstream 118496 13967107 ~ 13967225 (+) True LOC122328230
TU226044 other downstream 192113 14040724 ~ 14042521 (+) False LOC122327219
TU226124 other downstream 609538 14458149 ~ 14462660 (+) True G152767
TU226184 other downstream 837893 14686504 ~ 14691808 (+) True G152808
TU226683 other downstream 1363847 15212458 ~ 15216942 (+) False kif14

Expression Profile