RNA id: TU226064


Basic Information

Item Value
RNA id TU226064
length 312
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G152729
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 14171944 ~ 14172255 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAATcttgttaaattaatattcatcGCATATTTCAGTTTACTGAGTCTCACCATGATGTTTAGTGCTCGTGTGAAAGACGgtgagcaccttctatatatgttcatatttaaaagctgcttgtgatggacTTCGGTTCATCACATGACATCACCACCTTCTTTTGAAGGTTATCAGcgtatttcaaaggtacaaaacagatttcagtactttaataggttggcaTATTAGCATTATATCAGTTGATGAAATTGCGGTATTCAAAtgtaagtttaaattaaatccGTAAAACCTACAATGTTGCTACCATattt

Function

GO:

id name namespace
GO:0015630 microtubule cytoskeleton cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component

KEGG:

id description
ko04110 Cell cycle
ko04111 Cell cycle - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU226063 lncRNA upstream 471 14171163 ~ 14171473 (+) True G152728
TU226062 lncRNA upstream 22450 14149176 ~ 14149494 (+) True G152727
TU226061 lncRNA upstream 24280 14147217 ~ 14147664 (+) True G152726
TU226060 lncRNA upstream 24752 14146770 ~ 14147192 (+) True G152725
TU226054 lncRNA upstream 93564 14076182 ~ 14078380 (+) False kcnip2
TU226081 lncRNA downstream 140311 14312566 ~ 14313105 (+) False ptk7a
TU226125 lncRNA downstream 285894 14458149 ~ 14462660 (+) False G152767
TU226120 lncRNA downstream 290500 14462755 ~ 14464082 (+) True G152766
TU226121 lncRNA downstream 290500 14462755 ~ 14464082 (+) False G152766
TU226114 lncRNA downstream 293547 14465802 ~ 14467522 (+) True G152765
XM_043222243.1 mRNA upstream 41610 14090550 ~ 14130334 (+) True slit1b
XM_043222277.1 mRNA upstream 83244 14078950 ~ 14088700 (+) True arhgap19
XM_043222306.1 mRNA upstream 93570 14073453 ~ 14078374 (+) False kcnip2
XM_043223347.1 mRNA downstream 29873 14202128 ~ 14246917 (+) True si:ch211-126j24.1
XM_043223348.1 mRNA downstream 29873 14202128 ~ 14246917 (+) False si:ch211-126j24.1
XM_043223349.1 mRNA downstream 29874 14202129 ~ 14246917 (+) False si:ch211-126j24.1
XM_043223350.1 mRNA downstream 29874 14202129 ~ 14246917 (+) False si:ch211-126j24.1
XM_043223038.1 mRNA downstream 76241 14248496 ~ 14270825 (+) True klc4
TU226044 other upstream 129423 14040724 ~ 14042521 (+) False LOC122327219
XR_006247779.1 other upstream 204719 13967107 ~ 13967225 (+) True LOC122328230
TU225879 other upstream 489997 13575738 ~ 13681947 (+) True G152584
TU225846 other upstream 753537 13417464 ~ 13418407 (+) True G152565
TU225829 other upstream 788167 13383153 ~ 13383777 (+) True G152558
TU226124 other downstream 285894 14458149 ~ 14462660 (+) True G152767
TU226184 other downstream 514249 14686504 ~ 14691808 (+) True G152808
TU226683 other downstream 1040203 15212458 ~ 15216942 (+) False kif14
TU227010 other downstream 1832309 16004564 ~ 16035615 (+) True G153322
unassigned_transcript_2545 other downstream 1950185 16122440 ~ 16122512 (+) True trnaa-agc_18

Expression Profile