RNA id: TU226124


Basic Information

Item Value
RNA id TU226124
length 2195
RNA type TUCP
GC content 0.35
exon number 3
gene id G152767
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 14458149 ~ 14462660 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATGCATCTTATTGCTTTCAATAAACTCTGCATCCTCCTTAAGATCCTTAGGAGGGGTTTTAACGTGAGCTTTGATGTTGTCATCCAGATACCAAGATTCATTCTCGTCAAAGATCATGAAGAGCAGAGCAAACTCTTCAATCTCTTTTTTCAGCCCCAGCGTACGAGCCAGACTCTTCTTGCAGATGACCAGCGGCCCAATCAAACCACTGTACATGTCCTGCATCAGAAGACAATCAAAGAGACTCTGGGTGCTTTCCAAAACGTCTGCAGATATAACTGTGTTACCACTGAATGCAGTTCATTCAAAGTAAATGATCCAAAATGGATGATGGCGAACTACATTTCATATActaccaaaatgtaaaataaatgcattcagtttatttaaacttaatgcattataaaaaatatttcatgtacTCACAGCTATCGTGTTTTTAGCTTATTATGACTGCATGTCTTATTTCAGGATTTTATTTCAGGATGCTACAcacaatcaaaaaaatattgttaagcTATGGTTAGTATAGCTAAGCCAGTGCTGGACATGTTACtaagttaaattaattaaaattaattatagttactatgagttacataattttaaagtaactaattaccaggGAAAGTAGGTATTGCGTTacttaaaagaaagaaaaacattcaaatggcAAACTTAGATGCCCCCaatattaaatgttgaaataattaaataatatttttttttacaaaacatttatctaTACTATTTATCTACTGACATGTAGCAGTCAgtcaataattataatattattataatttaacattatgTTATGATAGAACAGAATTACCAAGTATGAATGCATGTCATATTGACTAAATTAGGACTGATGTGGTATTTGTTCTTCATTAATGTTTCTATAAAAAAGGggacaaaaaaagtttataatatCAAAAGTACTACGAATTgtactactaataacaatatgtaaacaaaataggGTGAGCACCAGCCAATAATATTGTCTTTTCAGCATTAGTTGCTCTTGCTCTATATCTTTGCATTTGTAGACAAAGGGACAGCAACCCATGCGCCTTCACAGTATTTATGCTGAGCCAGATAGactgaaaaattaaatttttattttattttcagtaacgGTAACAGcgttattgaaaaaaataacgcAGCTAGCGAAGCTGTTTATGTACAACACCATTATTCCCATCACTCAGCAAAACCATGCTTAATTTTTGGTTACCTTGATTTAActaaaaccatggttaatttttgTAAGGGATGAAAATGTGACATGAAATGATATGAATTCACCACCAATTTGCCAAAAGGTAATTAGCTATGAATTGCCATTAGACAAAAAAAGCAAGGTCATTATTTTTTAGGAAACATTACACTGGTTTTGAACAAGGTCCTGTAACCTTGTTTCATATAGTGAGAAAGGTACCTTGATAACATCCACTGTGGAGTAATATGCTCCAACACTGCATTCCTCTTGCTGTTCTGTTGGCCCAGAAGTCTTTGGGAGGTACCAGGTATAGGTCTGAGTTTCACCTTTAATGAACAACACATACATTTAGACTTAATAAACAATATGAAGgttattttgtgtaatatataacaGTCAGATCTTACCTGGAGGTGTCAGGGCCACCCGAGGGCTGTCAGTTTTAACTCCATGGGCATGTATGGAGTACGGCCTCTTAGCCATGTTCTTAAATACAATCTTTACTTTTTCTCCCACTTTACCATGGATCATGGGTCCTGTGATGAGCATATTTTAAAGGTTtacaaacatatacattaaaaaaagagttaatGTACTGCaaattctattaatatttaccCATAATTCCCAAGTGTTTTGCATCATCAGATATTTCTTTGGGCTTAGTGAAGGTTTCATCGGTGTACTCTCTGTACAGCACCTTCTTATATTTTGAACCAATAAATTTGCCTTCTTTCTTGAGGAACTCATTGCCTGGACTGCTTTCAGACTATGGTGCATCTGCTCCTCCCATGTGCGGGTGGGAGAATAGTCCCAGTCCATCTCAATTGCAGCGATGTAATACTTCTTCTGTTGTAGCATTGTCTCAGACTGACGATTCCAGATGCTACACTTTTCCACTGTATAATTGGCTCTCATGCCTCCACGATAATGATCTGTGGTTTTACATACCACCTCAAACTGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU226081 lncRNA upstream 145044 14312566 ~ 14313105 (+) False ptk7a
TU226064 lncRNA upstream 285894 14171944 ~ 14172255 (+) True G152729
TU226063 lncRNA upstream 286676 14171163 ~ 14171473 (+) True G152728
TU226062 lncRNA upstream 308655 14149176 ~ 14149494 (+) True G152727
TU226061 lncRNA upstream 310485 14147217 ~ 14147664 (+) True G152726
TU226120 lncRNA downstream 95 14462755 ~ 14464082 (+) True G152766
TU226121 lncRNA downstream 95 14462755 ~ 14464082 (+) False G152766
TU226114 lncRNA downstream 3142 14465802 ~ 14467522 (+) True G152765
TU226118 lncRNA downstream 3142 14465802 ~ 14468653 (+) False G152765
TU226152 lncRNA downstream 86153 14548813 ~ 14549518 (+) True G152787
XM_043222325.1 mRNA upstream 1152 14441534 ~ 14456997 (+) True hps3
XM_043222326.1 mRNA upstream 1152 14441535 ~ 14456997 (+) False hps3
XM_043222360.1 mRNA upstream 65247 14379851 ~ 14392902 (+) True elavl2
XM_043222361.1 mRNA upstream 65247 14379851 ~ 14392902 (+) False elavl2
XM_043222489.1 mRNA upstream 106349 14314440 ~ 14351800 (+) True mark1
XM_043222276.1 mRNA downstream 27123 14489783 ~ 14492223 (+) True tm4sf4
XM_043222322.1 mRNA downstream 43620 14506280 ~ 14508164 (+) True LOC122327136
XM_043223527.1 mRNA downstream 99417 14562077 ~ 14575943 (+) True pex6
XM_043222332.1 mRNA downstream 253348 14716008 ~ 14771239 (+) True anos1b
XM_043222334.1 mRNA downstream 253348 14716008 ~ 14771239 (+) False anos1b
TU226044 other upstream 415628 14040724 ~ 14042521 (+) False LOC122327219
XR_006247779.1 other upstream 490924 13967107 ~ 13967225 (+) True LOC122328230
TU225879 other upstream 776202 13575738 ~ 13681947 (+) True G152584
TU225846 other upstream 1039742 13417464 ~ 13418407 (+) True G152565
TU225829 other upstream 1074372 13383153 ~ 13383777 (+) True G152558
TU226184 other downstream 223844 14686504 ~ 14691808 (+) True G152808
TU226683 other downstream 749798 15212458 ~ 15216942 (+) False kif14
TU227010 other downstream 1541904 16004564 ~ 16035615 (+) True G153322
unassigned_transcript_2545 other downstream 1659780 16122440 ~ 16122512 (+) True trnaa-agc_18
unassigned_transcript_2548 other downstream 1663876 16126536 ~ 16126608 (+) True trnaa-agc_19

Expression Profile