RNA id: TU226177


Basic Information

Item Value
RNA id TU226177
length 988
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G152807
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 14579474 ~ 14583369 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCTTTTCCTGCGCATGAGGGTGACCTGAGGCCTCTTCAAGCCGGCGATGAGCAGCAGCAGTCTGGGTCGGGACTTGGTGAGCCAGCTTCTCAGTAGCGTCCCCTTGGGAAACCTAGAAAACATCGCATCCTAACAAACTAAAGCGCTCCTCCTGTGTGTCTGCGAGCACAAAGCGCTGTGGAAGTGTGGCGTTCCTCCAGAACAGCGGCACAGTACCTCAAGCAGCAACACTCCTCACCGAAGCACCATCTCAACCAGCCCACAGCCTCCTGAGAACCAACCCCTTCACGCTCCAAACGCTCCCATAACAGGACTTCAGATGAAGGGTGACAGTATAAGCCAGCTTTTATACTCACGTCTCGCACGTCTGACTGCTGAGCtcaatggaaaatataaaacttcAATTGTTTCAACTTTTGCTGGTCGAGCATGACCCAACGGGCCAGAGAGAGATCTAGCAACGTTTAGACGCGCTGCGGCCGCGCTGAAGCCATTGTTGTTGTCCCAGAGGGGCTCGATGTTAAATGCGCAGAGAGCaacattgtttgttttgagGCCTTGTTttcctcgttttttttttcttcttcttccaatTCTGTCTCTGATGTTAGCCCAATAATTCTCCCGTAGGACAAAATTAGCTGCTTAGCTAATTCATCAAGGTGTCCAAAATGGATGTTACTCCCACTCTGGGAAGCTTTGTTGATTCATTGTTGTACTGATCCATCTATGTCTTCTTAGATTTCTCCAGTATTTGACTTTTCAAAGCGATTTTGAGATGTCATATCCAAATATTATGTTCACAATATCTTGACTTTCAACTTGAAATTTAGTCCAAAGATTGTCTTCTTCTAAAAAATGTACTAGCAAAAAATGTTCTAGTCTTTTCAGATTTTATCCACGCAAACACTGGCTGTTGAGATGCCGTATCCGAATATCATATTCACAATCTTGATTTCTgcactttcaaaaataaactgcttcttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU226152 lncRNA upstream 29956 14548813 ~ 14549518 (+) True G152787
TU226118 lncRNA upstream 110821 14465802 ~ 14468653 (+) False G152765
TU226114 lncRNA upstream 111952 14465802 ~ 14467522 (+) True G152765
TU226120 lncRNA upstream 115392 14462755 ~ 14464082 (+) True G152766
TU226121 lncRNA upstream 115392 14462755 ~ 14464082 (+) False G152766
TU226190 lncRNA downstream 124334 14707703 ~ 14711539 (+) True G152809
TU226227 lncRNA downstream 130844 14714213 ~ 14714879 (+) True G152844
TU226234 lncRNA downstream 199238 14782607 ~ 14783802 (+) False sirt7
XR_006247723.1 lncRNA downstream 224474 14807843 ~ 14809151 (+) True LOC122327819
TU226243 lncRNA downstream 224736 14808105 ~ 14808418 (+) False LOC122327819
XM_043223527.1 mRNA upstream 3531 14562077 ~ 14575943 (+) True pex6
XM_043222322.1 mRNA upstream 71310 14506280 ~ 14508164 (+) True LOC122327136
XM_043222276.1 mRNA upstream 87251 14489783 ~ 14492223 (+) True tm4sf4
XM_043222325.1 mRNA upstream 122477 14441534 ~ 14456997 (+) True hps3
XM_043222326.1 mRNA upstream 122477 14441535 ~ 14456997 (+) False hps3
XM_043222332.1 mRNA downstream 132639 14716008 ~ 14771239 (+) True anos1b
XM_043222334.1 mRNA downstream 132639 14716008 ~ 14771239 (+) False anos1b
XM_043222333.1 mRNA downstream 132639 14716008 ~ 14771239 (+) False anos1b
XM_043222335.1 mRNA downstream 132639 14716008 ~ 14771239 (+) False anos1b
XM_043223112.1 mRNA downstream 188617 14771986 ~ 14779547 (+) True senp5
TU226124 other upstream 116814 14458149 ~ 14462660 (+) True G152767
TU226044 other upstream 536953 14040724 ~ 14042521 (+) False LOC122327219
XR_006247779.1 other upstream 612249 13967107 ~ 13967225 (+) True LOC122328230
TU225879 other upstream 897527 13575738 ~ 13681947 (+) True G152584
TU225846 other upstream 1161067 13417464 ~ 13418407 (+) True G152565
TU226184 other downstream 103135 14686504 ~ 14691808 (+) True G152808
TU226683 other downstream 629089 15212458 ~ 15216942 (+) False kif14
TU227010 other downstream 1421195 16004564 ~ 16035615 (+) True G153322
unassigned_transcript_2545 other downstream 1539071 16122440 ~ 16122512 (+) True trnaa-agc_18
unassigned_transcript_2548 other downstream 1543167 16126536 ~ 16126608 (+) True trnaa-agc_19

Expression Profile