RNA id: TU226227


Basic Information

Item Value
RNA id TU226227
length 495
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G152844
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 14714213 ~ 14714879 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCATATATTCAATCCAAACTTCAAGATGTACAGTAGCagtaaataatcaaaaagacGATGTCTTACTGTTTCCATGAAAGGTCTAATGGCACATTTCTTCCATGATTTGGGACTGAGAACATGGCACTTAGTCTCAAGGACATCTAAATCAAGATAATAGACCTTTCCAGCTGGACCTGTTGATGCTCCTGGACGTTTGTGATTCTATTAAGGGCAAATTTGTAACCTGTTTGTCTGTCCTCGTTTATGTATGTGACGGCCAGTCGGGACAACTTCTCCACAGTCTTGTCGTCACAGGAAACATGAACTAAACTTGTCCCAGAGACCAACAAAATGTTTGTGGTCAGGAGAATCCAAATCAGAGTCAacatctttctttctcattagAGACACTGTCATACACAAAATAaccagttttatttaaaatgcagtctAGCATCCGTTTATACCAGGAGATGAATGTGACTTTGGAATCAGCTTTGATAAACATTAAC

Function

GO:

id name namespace
GO:0048732 gland development biological_process
GO:0061008 hepaticobiliary system development biological_process
GO:0001889 liver development biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU226190 lncRNA upstream 2674 14707703 ~ 14711539 (+) True G152809
TU226153 lncRNA upstream 129594 14548813 ~ 14584619 (+) False G152787
TU226177 lncRNA upstream 130844 14579474 ~ 14583369 (+) True G152807
TU226152 lncRNA upstream 164695 14548813 ~ 14549518 (+) True G152787
TU226118 lncRNA upstream 245560 14465802 ~ 14468653 (+) False G152765
TU226234 lncRNA downstream 67728 14782607 ~ 14783802 (+) False sirt7
XR_006247723.1 lncRNA downstream 92964 14807843 ~ 14809151 (+) True LOC122327819
TU226243 lncRNA downstream 93226 14808105 ~ 14808418 (+) False LOC122327819
TU226539 lncRNA downstream 254536 14969415 ~ 15070483 (+) True G153039
TU226553 lncRNA downstream 363967 15078846 ~ 15106926 (+) True G153050
XM_043223527.1 mRNA upstream 138270 14562077 ~ 14575943 (+) True pex6
XM_043222322.1 mRNA upstream 206049 14506280 ~ 14508164 (+) True LOC122327136
XM_043222276.1 mRNA upstream 221990 14489783 ~ 14492223 (+) True tm4sf4
XM_043222325.1 mRNA upstream 257216 14441534 ~ 14456997 (+) True hps3
XM_043222332.1 mRNA downstream 1129 14716008 ~ 14771239 (+) True anos1b
XM_043222334.1 mRNA downstream 1129 14716008 ~ 14771239 (+) False anos1b
XM_043222333.1 mRNA downstream 1129 14716008 ~ 14771239 (+) False anos1b
XM_043222335.1 mRNA downstream 1129 14716008 ~ 14771239 (+) False anos1b
XM_043223112.1 mRNA downstream 57107 14771986 ~ 14779547 (+) True senp5
TU226184 other upstream 22405 14686504 ~ 14691808 (+) True G152808
TU226124 other upstream 251553 14458149 ~ 14462660 (+) True G152767
TU226044 other upstream 671692 14040724 ~ 14042521 (+) False LOC122327219
XR_006247779.1 other upstream 746988 13967107 ~ 13967225 (+) True LOC122328230
TU225879 other upstream 1032266 13575738 ~ 13681947 (+) True G152584
TU226683 other downstream 497579 15212458 ~ 15216942 (+) False kif14
TU227010 other downstream 1289685 16004564 ~ 16035615 (+) True G153322
unassigned_transcript_2545 other downstream 1407561 16122440 ~ 16122512 (+) True trnaa-agc_18
unassigned_transcript_2548 other downstream 1411657 16126536 ~ 16126608 (+) True trnaa-agc_19
unassigned_transcript_2549 other downstream 1413031 16127910 ~ 16127982 (+) True trnaa-agc_20

Expression Profile