RNA id: TU226742


Basic Information

Item Value
RNA id TU226742
length 2043
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G153182
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 15468050 ~ 15516152 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaacaaattaattaccttcattataattacattacGCTATGAAATGTTTAATCATTGCTTCTGAGACTCAACATAGTGAATGGCCTTTGTGCCATTCCTCCTAACTATACCTGATTGTGTGACTAGATTAATTGCATTATTGGCACTTGCAATGGATTCTTTTCTGCTCGCAGATCGAATCGTTGAAAATCAACAAACCAAAAGCAGCACTCACCACAAAGagttatgtaaatatatttaaaatcacatttgatttaatacttactctttattaatattagctaataaaatgtgttaacatgaacaagaaataaaaacagaaaagctcTAAATGCTGTATAGTTGAAATACCTGAAAAACTGTAACTactagttaatgcattaactaacattaactaatGGGAAATCATGGTATGATGTTAaaattgaagaaaaacacaaaaagaattGGTGCAGCAAgtcaacaataaaatacatgagAAGTTAAAGTTgaaaaatgaactcaaaactgAATTcatcaacgtttttttttatgatgtcaaAAATGGTACACATTTTTAACTGTGTGCATCTACGcatcttttaaaaagatttctcCTTACATCCTTACTTCACATATTCAGAGTTACTTTTTTGTAGaagtaataaacattttcaagaaATGTCTTAATGAAAGAACCTGCTTCAGATTTTTACTATTACCTTTTTCACTTGATTTTGAGGTTTGTTCAGGAGTGTGTGAGGGTGAGGGCTCTGATTCTAAAATTAAAAGCGGGTTCATTTTAGATGGTCCAGTACAGGATTTAACTACAAACATACTAAAAGTATAAAGGcaatacaaaagaacaaaacatatTCTTGATCGGTTACATGTGCTCATGGCACGGCATGGTGGGAAGCTGGAGGTCAGAGTGTGAGAGTATAATAATGCAGGAGTGTGAGTTTGATGACAGCTTTACCTTTGCTGGGGGTGACTGCAGGTGAGTTTGATGAAGTGGATGAAGTGGTGAGATTTGACTGAGTGGCTGTAATGATGGATTGACAGCATGAAACAATATCTAAGCATCGAGTTTTCACGTATACATTTTTGAGCCAAAAGTACAAccttatataaaacaaaaatggttacacagtcacacagacacacatacaacagACTGGAAGCATcaacataaacatttatatcTAAGAAAAAGCTACTTGATTTTGACTAGATTACAATATCTAGTACATCCTTACGCACACGTTTCTTTTTAACCAAAACAGGTGCTTAAGATTTTGAATACATTACATGAGAAACActccactatttttgaaaataggctcattttccaactcccctagatTTAAAGACTTGAGTTTTAGTCTTTCGAATGAATTCAGCCACTCTCAGGGTGATTAGGCCTGTAGTGtcacgctcaaaaatgaccaaagagtttaaatatttttcttattttgaaaCTCGACACTTCTACAGTTACAGCGTGTACTAAGACTGATGGAAAATTCAAAGTTGCGTTTCCAGGCTGATATAACCAGGAACTATTCCGGTGTAACAGTCAAGAAACTTCACTGCCGTACTATGGCCGCAGCAGATGCAGTGATATTACGCAGCATCTTCAAAATGATGGGGACTCTTTGGTCCTTTTTGAGGGAGATGTTAAaagtctaatcagattcaatgatccaTGCTAAGCGACGACTAAAAGTCCTACATCAGACCTGGAGAAcgactgaatggattcaaaaatgataaaactcaactgtttaactctagggagttggaaaattagcctattttcaaaattaGCTCTctcaaaaaataagtaatagtaaacgaaacatacaaaatatctAACAACTTGATCAGGAACGGCATGATGGGAAGCTGGAGGTCAGAGTGTGAGAGTATAATAATGCAGGGGTGTGAGTTTGATGACAGCTTTACCTTTGCTGGGGGTGTCTGCAGGTGAGTTTGATGAAGTGGAAGGAGTGGTGAGCTTTGACTGAGTGGCTGTAATGATGGATTGACAGCATGAAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU226739 lncRNA upstream 13321 15453964 ~ 15454729 (+) True G153180
XR_006247706.1 lncRNA upstream 156983 15290695 ~ 15311067 (+) True LOC122327701
TU226598 lncRNA upstream 330427 15136335 ~ 15137623 (+) True G153083
TU226578 lncRNA upstream 356072 15110215 ~ 15111978 (+) True G153065
TU226559 lncRNA upstream 378133 15087487 ~ 15089917 (+) True G153056
TU226801 lncRNA downstream 106941 15623093 ~ 15623770 (+) False dennd1b
TU226811 lncRNA downstream 213625 15729777 ~ 15734653 (+) True G153227
TU226876 lncRNA downstream 244353 15760505 ~ 15762668 (+) True G153237
TU226878 lncRNA downstream 250569 15766721 ~ 15767556 (+) True G153239
TU226851 lncRNA downstream 257553 15773705 ~ 15834398 (+) False LOC122327891
XM_043222362.1 mRNA upstream 179158 15220447 ~ 15288892 (+) True LOC122327180
XM_043222363.1 mRNA upstream 179158 15220447 ~ 15288892 (+) False LOC122327180
XM_043223940.1 mRNA upstream 248286 15195916 ~ 15219764 (+) True kif14
XM_043223096.1 mRNA upstream 273178 15189827 ~ 15194872 (+) True ddx59
XM_043223844.1 mRNA upstream 332454 15130400 ~ 15135596 (+) True scamp4
XM_043223763.1 mRNA downstream 106943 15623095 ~ 15712086 (+) True dennd1b
XM_043223765.1 mRNA downstream 106943 15623095 ~ 15712086 (+) False dennd1b
XM_043223764.1 mRNA downstream 106943 15623095 ~ 15712086 (+) False dennd1b
XM_043223766.1 mRNA downstream 106943 15623095 ~ 15712086 (+) False dennd1b
XM_043223769.1 mRNA downstream 106943 15623095 ~ 15712086 (+) False dennd1b
TU226683 other upstream 251108 15212458 ~ 15216942 (+) False kif14
TU226184 other upstream 776242 14686504 ~ 14691808 (+) True G152808
TU226124 other upstream 1005390 14458149 ~ 14462660 (+) True G152767
TU226044 other upstream 1425529 14040724 ~ 14042521 (+) False LOC122327219
XR_006247779.1 other upstream 1500825 13967107 ~ 13967225 (+) True LOC122328230
TU227010 other downstream 488412 16004564 ~ 16035615 (+) True G153322
unassigned_transcript_2545 other downstream 606288 16122440 ~ 16122512 (+) True trnaa-agc_18
unassigned_transcript_2548 other downstream 610384 16126536 ~ 16126608 (+) True trnaa-agc_19
unassigned_transcript_2549 other downstream 611758 16127910 ~ 16127982 (+) True trnaa-agc_20
unassigned_transcript_2551 other downstream 613134 16129286 ~ 16129358 (+) True trnaa-agc_21

Expression Profile