RNA id: XM_043223768.1


Basic Information

Item Value
RNA id XM_043223768.1
length 7603
RNA type mRNA
GC content 0.40
exon number 19
gene id dennd1b
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 15623093 ~ 15712086 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTGTGCTCTCTTTCAGATGTTTTCAGACAAGTTGTAGTTGTACATTTCTCCCGTGATTTgtgaaatatgcataaaatgagGCAATTTATGCACTAATGTGTACAGATTTACACAAATTGCATTATATGCTATACTGTAAATCGTTAtgtaaaatcattaataaaaccatgttcaaaaatgaaaacattaaagtatcaaatacacatttcattttttaaatggacCACTTATCAAATCCTTAGATAAGTTCACAACTTCACACGGAGAACATCATAATTCACTGAGTGTTTACACAAATGAATCACATTAAATGTCCCCATTCATGAAAATGTTAGGAGACGAAATGATACGCGAGTTAAGAGTTAAAGTGCCAGTATGTAAACAGGTCAAACGGTATCTGTAGGAACTGTAAATATTTGTGAGTGTAAGAAACAAAAGTTTTCTCTGTGAGGTCACTGACCGATTGCGCTGTGCTGGACCCCCTATTGAGCAAATGGCTAATGTCAGAAATAGCATTGAAATTACCCACGCTTCTCCCATCCAGCCTGTGAGCCAGAAGTGCCGGCGCAAAGCACAACTTGagcgttttgttttgtgtaaagacaaaggaaaaagaaaagcgtCATCTATAATCCATCTCAGCGAAACAGGCACAGTTGGTCGGTTGCGCTTTGCTTTGCAGCGTTGTTGACATTTAACAGAGCGAGCATCGAACAGGAAGTCAGCCCTCGTGATTTACGGGAAAACAAATTGTCAGGAAATACACTGCGCCAAATggttttcttatttctttctgaaAGTTTCACAGCAGCGGGAGACGAAGAAAAGTTCGAATTAGGAAAAGGGGATGAAAATACAGAGCCTGCGTGGAGCCGGAGTTTCTCTATCAGTCTGTTATCGTTCAGTTATGTGTAACGGAGCCGCTGAAAGAGAAGTGAGGAAGTCCAAGCCTCTTCTACACAAACAAATCATGGGCTGAGTACACTGGGAAGTCACGGGGGTCGGGCATTAAGCCCTTAGATCCTCTGTGTCATCGACCCGCTCCATTACCAAAAGAAGATGACTTGAACGACATGTTGGAAACGCTGCACACCCACCCCGTGCCAAAGCCGAATACACCAGTGAATCTGAGCGTGAGCAACCACTTACATTTTGCCAATGGGCAAGTAGTGCAGGATCCAGGAAGCAGACTGTCGCATTCATACTTCATAGCTCCTGATATTAATGGACTCCCCACCATACCTGAAAATAGAAATTTAACAGAGTACTTTGTAGCAGTGGATGTGAACAACATGTTGCACCTCTACGCCAGCATGCTGCATGAGCGACGCATCATCATTACCTCAAGCAAGCTTAGCACTGTCACGTATTATCCGGAGCAGTTGCGTTCGACCACAATGTCACAGAACTCAACggacacaacaacaacaacaacaacaacactccAAGCTTTACCCATCGAGGACGTATACAAAAGTGATTCAGGATTAAAGCTGATCTCTTTGAAGCTAGCTGTTGTGCCCCAGCCAAGCTTGTTAACTGCATGCGTGCATGGGTCCACCGCCATGCTCTACCCTATGCACTGGCAGCACATCTTCATCCCTGTACTTCCTCCTCACCTGCTGGATTACTGCTGTGCGCCCATGCCATATCTGGTCGGAGTTCATCTCAGCCTTTTAGAGAGAGTAAAGAGCAGATCCCTGGAGGATGTGGTCATTCTGAACGTGGACACAAACACCCTGGAAAGCCCCACGGATGACCTACACAACCTGCCCAGTGACGTGgtctCCAGTCTGAAGAGTAAGCTGAAGAAGCAGTCGACTGCTACAGGCAGCGGGGTGGCTCGGGCCTTTCTGCATGCTCAGGCTGCGCTGTTTGGCTCCTATCGGGACGCCCTGAGATATAAACCTGGAGAGCCAATCACCTTCTGCGAGAAGAGCTTCGTGGCACACCGCTCCAGCACCATGAGAAGTTTCCTTGAGATGGCCGTGAACCTGCAACTCTTCAAACAGTTCATTGAAGGCAGACTGGCCAAATTAAACGCAGGAAGGGGCTTTACAGACGTCTATGAAGAGGAGATCACAGAGGGGCGCTTCTGTAGAAgtaattCGAGGTCTTATCAGCAGTGGATTCACACCAAGATGCGGCAGAGGGCAAAACCGGTCGTGAAAAACCTTCAGATGGCCAAAGATCACGCCAAACGGAAAATCCGCGACATGAAGGACAAGATCACACAAAAGGACGCTGAAGAGGAGGAAAGCCCGTACTGTGCAGGTTCTCCCACCAGCACTAAAAGCCTCTCACCCAGGAGACTTCAGAGGAAAGCGCATCAAAATCCGAAGTCGTCTCCACACATGAGCCTGTGTTTTCCGGACGGttataacaacgacaacaaTGACGACGCAGCCAGCAGAATATCCTCTGAGGACAGTGGGGAAGTGGCGTCATACAACGAGGACAGTGATGACTCTGATTTAGAGTTTCAGCCTGAAGTTAGTCAAACGGGTCAGATGAACCTACTGGAGGAGATTTTGGACTCTCTCAGTACATCCAACATCGAACAAGGGCGACTGTACGCCGCCAAGAGCTTGGACTTTTTTAGATCAATTGAAGACCTAGAATATAATACCACGaaaaataGCAAGTCCCCACTGGGAAGTAGTCCTGCCCAGGTCAGTTCAGAAGTAGAAAACGGAGAACAAGGTGGATGGAATATGGGTCAAGACGACAGCGCCGTCCATGGTAAGCATCTCCCGCCTTCTCCTCGACGCCAAGTCAGCTCCTGTTCCCTTCCTGTTCGTCCTCCCTTTCCCAATGACCTCGCCAATGAAGAGAACCAGAGGAACTCTCTTCCTGAGACGCCCCAAGTTCAACTCTCTGTACCTTGTGACACGGAAAAACCCAGCAGTTCCCAGCTGAGTCCAGACAACCGACAACCGACAACAAGCTGCAGCCTCTCCCGACAGAAGGTCCTTTCAAGAAAAACCCAGAGGCCATCCCTGGAACATGCCCAGCAGAAGGCAGCAAGTGGACAACCTTCGGTCCTCGTTCCGTGGGAGAGGGAAAAACAGCCCCAGGAGACAAATATGGAAGAAAGAGGAAATGAGACTCAGGAGAAAGGCTTGCTGGAGGAGATTGAATCCATGTGTCATGTGAGCATGGCCCTCAAAAGCAACCAGGAGCTCACACACATCCGAAACAACACCAGCCTGGACAAATCCTGAGAAAACGGCACAACACTCACCTTTCTCTTTTCGTATTCACGCTGTCCTCTGATGTCACACCAGCACTCTTTGCATGAAGTGTTTGCAAAGGTGTTTTGTAGTTAATGTGGATGTTCGGTCCTCTTATTTCTTACATTTGGTCCGAAACAACAAACGGTATCGTTGGAAAGTACGAAAATTAGGTTCAAAGGGATCTATGTCAGCATTCGACatccagttttatttatttcagcagaTGATTGCACTTGCTTAGTTTCAAATCACTGTTTCGATAAATCACTGTGGATGAGGAACGGATTTAACCCTGTATCTTATACTAAATAGTACGAAAGTATTTAATCTCAGCTTAATATAATGCCTTAAACAGATTTCATTTGCTTTTACACAGTGACTGTGCCACTGTAGCTGACTAGCTTACTAACTACAATCACTATTTTTTGCATGTGACGCGTCTTATAAAGAGAGATTTAACTAGGCCAGGTGGACAACTGGTtctcaattttatatatttttggggaaaaaaaagtattttttcaagACAATTCTCAGGTTTATGCTTTTATCCAAGATGAGAtgttagcattttaatttcttaaaccAAACCGAAAATGCAGAAATcccaattatgttttttttaaagattaataaacTTAGTATATTGACATCGAAGTGTGAAAATACTGGCGCTACTGATGCCCAGTGCATTGAGGAATACGTGTTactgataaataaattagttttaaaccctttattattgttttattatgtctGAAGGCCAGAAGTGTAATCTACGCAAAGTATGGAAACACAAACTTCTAGCTTATAGCGATAAGTTTAATTTCGCACAAAGCTGTACAATTTGTAACGTAACACAAGTACACGTTGCATTCTCGAGGGTACTGTAGCAGCATTATCGTAAACCAGACGCATTCAAAATTGCATACCGAGAATCTGCTACGATTTAAGAGGAACAAATTTCGCAACCTTCAAAAATGCCTGTCCTCTATAGTATGAATGCGTAGTACTACATTTGCCCTTTTCTCGTTGTCGTGTGACTTAAAATGTTTGCGTCTCTTCACTGCCATTCGCGACTCTTCTTCCGTGGCCTCAAGGGATAATAAATGATCCACTGAATGTGCACTTCAAAATATCGCAAGaagtagttttattaatatatcaaaTTCAGTACTCTTTTCGCGTACAGTTTTAACTTGCTATATAGTCGTTAAGTAGGCATATTCAAATGCAGGGCATTCATCTGTAGCCAGATTTCTCTTTCTAGTTTCATGAACTACTTTCATGGTGATTTGAGTCTTGCTAAACAAGTTACAACTTTCGACTCGTAGCTAGATAGATATTTAAACATAGCTAACTCTCTTGAGTACTAATATTTGCACATTAAAACTTGCAGATCGTTTTAGTTACGGAAAGATTTGCCTTGTCTTCTGTTTCACATTCATGTCACCTTCAAAACTTTACTGCTACACCAAACAGGATGTGGTCATTAGATCCGGCACTTGTTTCTTTAGTGGCTGATGAATTATTTAGGTCCTTTAGCGGAGTGATTTAGGACATATGCCATACTGTCTGACACTTTAATAACTCTCCTCACCCCTCCTGCGTAATCTGCTGTGGTAACGATATGgctgtaaaaacattaaaagtttaGGACCCCATCTCAAATCAAGCTAGGCTTTTTAACGTAGCTGCTTAACTCAAAGCTGTCCTGAAAGCATGTATTTCTTCTGCCTTTGAACAAATCAGATGTACTGATGAACTATGCAAAATTAGTGTTATCAATCGACTTAAACTgcccttattttatttattcactggGTAACACCCACTATCGTGTACAAACTTTGTCGAGTTTAGTTTTGGCTCGGTACCCACAAGACATGCAGGACATGTGGTTGGAGTTACAATGTCAACAATTATGATATgggtatgaaaaataaataaaataagtaaaaggtGAAATGCAATATGTCACGAATAATTATCTACGGAAGCTTTTGTCTACTACGGGATTTAAAAAGCCAATTGGGGCATTTTATCGCACAGTACTGACTCAGTTCTGCGGAAAAAGTAATATTCGGAAGTTGATCAAAATGAcgaactgtaaaatattaatcattttaaaaaatcttgatGTTTACTCGTAATTCTGagagaaataaatacagttaaaataatgataactaCAAGATGTAAAGTCAGGTTTCATGGACTGGTGATCTGACCAGTCATAACCGACAGACAAATCAGACCGTAGAGTTGGCAAACGTAAACTTGAAAaatttgttttgacattttctcGGTTGAAACAAGATAACTTCTGATTTTTATTCAAGTAAAATGAgttcatgtttatgttttaggCTATAAGTAGTAAAAAGGACCAAACCGATCAAACCGATAACCGATTATCGGTACAAATGACGCTGAAACTCTACAGCGTTCTGTCACGAGCcacaaaacagtatttattgatGGAATTTCTTACAAAATGACAATGTAATGCGTCTCTCAGTTTCCCTTTGCTTGGCGACGTGTCTTTGTGAAGGGTCCGTTGTGAGGAAAAAGTTCAGCGTTTACATCTCGCATTCAGAGTAACATGAGAAAATCGCAATAATCTTTCTTTGCCGTTGTTTCGTTTTAAACCTGTGGCAGAAAAAGTGAGCTCCCATATTCTTtacacttaaaaattttattttgtttttgccatcAAAGGTATTTCTTGTAAACGGGAAGATATGCGtctactgcttttttttaaactatcaGCAACTTAAGGGAcgttttgaaatgaaatttgacccccatttctatttaaatgcaaGGTTGTGCCTTAACTGAGTTCATCTGCTTAAATAATTGCTTCAAATGCTAGGCAGCTGCCTTCTAACTCATAAATGGAATCTCATACATGACTGCTTTGATAAACTCTACGTAGTCAGCAGCTGTTTTATTGCTAAAGCTAAATTTTGTGGGCAAAAAAAGGTCCACTGtcaatagttaatagttaacataTAAACCACAGCtcactttaaaatcaatcaacTTTCTGCTGATCACCGTTTTCaatccataataataataataatagtatatggCCACACCTTAATGCAAGTGATTCTAAGTTTAGGTTTTAGAACAGAGCTTATATTTATCACAGGTACTTTAGTATTTCGAGTTTTTATTTACGGTTTCTAAATCGCATAATATACttgaaatactgtataataGTAGAAAATCgctagtatttttattttaattgaaactcTATTTTGCGCTAATAACCTGTTTGCAGATATATAAGAAAGACCATCAGCCTGTTCAAAAATCAAGCGCACAGAAACTCACAATGGCCATGTGATCAGTTTTACATTCTCTGCGTATTGTCTCTATTGTTTTTGATACCGTGTATTTAGCTTTGGTTTAGCATTATCGTCCATGTCCTTTAAgtgtgctctttttttaaataatatgtctCTTGTAATGACTGAAAATTCAGAATAGCTAGAATTTTGCCTTGAAAAGGTATTTAACCCATGTTCTAATATGCATATTCGTTATTAAAATAGAGATCTTTTTATTTAACgtcttttagcatttttttaaatctggtgATATcgcaacataaaaatgtttaatcttttttttttgatcaaactCTATACATTTTTGGGAAACCTGTATGAAAACAGTCATTATAGTCGCTCGGTTCCATTCAATTTGATCCAGTTACTGTTCACCAGCTGTAAAATTTAAACACTACTTGAAACTAGACAGTCAGCACATTAAGGGAAGTGCTacccaaaatatttttcttcttattgATGTGCATTTTTGCGACGTTCTATGGTATTTTTTGGTGTTACTTTACAGATGCATGAGCGCACCTCTTTATATCAACAGAGAAATACGATGTCAACTTTTACGGTACAACTTTTGTAGTATTGTGACGTTCTTCATTTTTGGTCTGTTTTGCTGTTGAATTCTTTTGTAAATCGAGTAAGGAGCTGCTGTAGCCGAATCACTGGACTCTCCAAACTGCTTCTGAATGTTCAACACACgcaacatattttattacacaaaaaGGCTGTACAgctcatttcattcattacggACACCAATCCGGCTTCATTTTCTTGAATGTTTGCTGGTAGGTGAACATGGATTCTCCATGCGATCGGTTTAGTTTGTGGTGGTTGAAGAGCTTTTGAGTGAATGAAGCTGGATGAACCCCGCCGCATGCTCTCAGTGCAGTTAAATCATTTTCAAGTGCAAATTAGGTCAGTCTGATGTGTTATTACAGGAACTACTGGTACCACTGTATGCACTgtgaactgaaataaatgatatatgtCTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU226801 lncRNA upstream 39831 15623093 ~ 15623770 (+) False dennd1b
TU226742 lncRNA upstream 147449 15468050 ~ 15516152 (+) True G153182
TU226731 lncRNA upstream 150962 15451449 ~ 15512639 (+) False G153178
TU226736 lncRNA upstream 150962 15487299 ~ 15512639 (+) True G153178
TU226740 lncRNA upstream 173333 15454912 ~ 15490268 (+) True G153181
TU226811 lncRNA downstream 17691 15729777 ~ 15734653 (+) True G153227
TU226876 lncRNA downstream 48419 15760505 ~ 15762668 (+) True G153237
TU226878 lncRNA downstream 54635 15766721 ~ 15767556 (+) True G153239
TU226851 lncRNA downstream 61619 15773705 ~ 15834398 (+) False LOC122327891
TU226821 lncRNA downstream 73572 15785658 ~ 15834398 (+) False LOC122327891
XM_043222362.1 mRNA upstream 374709 15220447 ~ 15288892 (+) True LOC122327180
XM_043222363.1 mRNA upstream 374709 15220447 ~ 15288892 (+) False LOC122327180
XM_043223940.1 mRNA upstream 443837 15195916 ~ 15219764 (+) True kif14
XM_043223096.1 mRNA upstream 468729 15189827 ~ 15194872 (+) True ddx59
XM_043223844.1 mRNA upstream 528005 15130400 ~ 15135596 (+) True scamp4
XM_043223394.1 mRNA downstream 23815 15735901 ~ 15752487 (+) True aspm
XM_043222434.1 mRNA downstream 167168 15879254 ~ 15886245 (+) True LOC122327224
XM_043222435.1 mRNA downstream 189046 15901132 ~ 15938182 (+) True LOC122327226
XM_043223557.1 mRNA downstream 231647 15943733 ~ 15956310 (+) True LOC122327890
XM_043223556.1 mRNA downstream 231647 15943733 ~ 15955960 (+) False LOC122327890
TU226683 other upstream 446659 15212458 ~ 15216942 (+) False kif14
TU226184 other upstream 971793 14686504 ~ 14691808 (+) True G152808
TU226124 other upstream 1200941 14458149 ~ 14462660 (+) True G152767
TU226044 other upstream 1621080 14040724 ~ 14042521 (+) False LOC122327219
XR_006247779.1 other upstream 1696376 13967107 ~ 13967225 (+) True LOC122328230
TU227010 other downstream 292478 16004564 ~ 16035615 (+) True G153322
unassigned_transcript_2545 other downstream 410354 16122440 ~ 16122512 (+) True trnaa-agc_18
unassigned_transcript_2548 other downstream 414450 16126536 ~ 16126608 (+) True trnaa-agc_19
unassigned_transcript_2549 other downstream 415824 16127910 ~ 16127982 (+) True trnaa-agc_20
unassigned_transcript_2551 other downstream 417200 16129286 ~ 16129358 (+) True trnaa-agc_21

Expression Profile