RNA id: TU226811


Basic Information

Item Value
RNA id TU226811
length 765
lncRNA type inter_gene
GC content 0.59
exon number 2
gene id G153227
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 15729777 ~ 15734653 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGTATCCAGGCCTGCAGAGACAGATGTAGTGCCCGATCTTGTCCAGACAGGTGGCTCCGTTCCTGCAGGGCCACGACACGCATTCATTCACCTCGATCTCGCAGTGTTTACCCTGGAATCCCGGCACGCAGAAGCAGGTGGGGCCGTCCCTTCTGCTGCGGCAGATGGCGCGGTTGCGGCAAGGGTTGGGGGAGCAGCGGTCCACCTTTTTCTCGCAGGAACTCCCGGTGTAACCCTCTTGACAGATGCAGACGTACCCCGGGCTCCTCTCTTGCACCGCCAGACATCGGGGAGTGTCCCCACACAGCCCCCGAGCGCAGAGCTGGGCACTGGTATGACAGTCCCGCCCCGACGAGCCGGCCTCACACTGGCAAACCAGTTCCCCCGGGTGGACGCCGGTTGGTTGACACGTCGCATTGCCCTGGCAGATGGACAGTTGGCAGAGCGCGCTGGAAGGATCGCAAGGCGTGCTGGGCAGGACTGGTGCAGGCGACTGACACTGGCACAGGAAGTCAGTTGGGGCATCCCTGCACTCTGCCCTGTTTTGGCAAGGCTTGTCCAGGCAGAGCGTTGAGGTCTCGGGAAGTGTTAAACCTATTTCTGTCCACTGTAGAAGAACAAACAAGACACATGCAACTAGTCTGAGCCACACTGAACCCAAGCCCGTAAGATCCATATCCATACTCGGATGTCATTGTGATAGCGGGCAAGCTGGCATGATAACGGTGTGTAACTCGAGCATCCTCCagagtgtctgtctgttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU226801 lncRNA upstream 106007 15623093 ~ 15623770 (+) False dennd1b
TU226742 lncRNA upstream 213625 15468050 ~ 15516152 (+) True G153182
TU226731 lncRNA upstream 217138 15451449 ~ 15512639 (+) False G153178
TU226736 lncRNA upstream 217138 15487299 ~ 15512639 (+) True G153178
TU226740 lncRNA upstream 239509 15454912 ~ 15490268 (+) True G153181
TU226876 lncRNA downstream 25852 15760505 ~ 15762668 (+) True G153237
TU226878 lncRNA downstream 32068 15766721 ~ 15767556 (+) True G153239
TU226851 lncRNA downstream 39052 15773705 ~ 15834398 (+) False LOC122327891
TU226821 lncRNA downstream 51005 15785658 ~ 15834398 (+) False LOC122327891
TU226887 lncRNA downstream 60786 15795439 ~ 15802159 (+) True G153244
XM_043223763.1 mRNA upstream 17691 15623095 ~ 15712086 (+) True dennd1b
XM_043223765.1 mRNA upstream 17691 15623095 ~ 15712086 (+) False dennd1b
XM_043223764.1 mRNA upstream 17691 15623095 ~ 15712086 (+) False dennd1b
XM_043223766.1 mRNA upstream 17691 15623095 ~ 15712086 (+) False dennd1b
XM_043223769.1 mRNA upstream 17691 15623095 ~ 15712086 (+) False dennd1b
XM_043223394.1 mRNA downstream 1248 15735901 ~ 15752487 (+) True aspm
XM_043222434.1 mRNA downstream 144601 15879254 ~ 15886245 (+) True LOC122327224
XM_043222435.1 mRNA downstream 166479 15901132 ~ 15938182 (+) True LOC122327226
XM_043223557.1 mRNA downstream 209080 15943733 ~ 15956310 (+) True LOC122327890
XM_043223556.1 mRNA downstream 209080 15943733 ~ 15955960 (+) False LOC122327890
TU226683 other upstream 512835 15212458 ~ 15216942 (+) False kif14
TU226184 other upstream 1037969 14686504 ~ 14691808 (+) True G152808
TU226124 other upstream 1267117 14458149 ~ 14462660 (+) True G152767
TU226044 other upstream 1687256 14040724 ~ 14042521 (+) False LOC122327219
XR_006247779.1 other upstream 1762552 13967107 ~ 13967225 (+) True LOC122328230
TU227010 other downstream 269911 16004564 ~ 16035615 (+) True G153322
unassigned_transcript_2545 other downstream 387787 16122440 ~ 16122512 (+) True trnaa-agc_18
unassigned_transcript_2548 other downstream 391883 16126536 ~ 16126608 (+) True trnaa-agc_19
unassigned_transcript_2549 other downstream 393257 16127910 ~ 16127982 (+) True trnaa-agc_20
unassigned_transcript_2551 other downstream 394633 16129286 ~ 16129358 (+) True trnaa-agc_21

Expression Profile