RNA id: TU226825


Basic Information

Item Value
RNA id TU226825
length 729
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id LOC122327891
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 15773705 ~ 15893138 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTGActtgatatttttttcctccaaatttAACTGATTAAAGCTCTGAAGTTATTTCTGTTCAAGACATAATTATGCAGAACTCAGGGCAAGATGAATCATGAGAAATGTTGAAACTATTACCGTAAATGCTTTGCCATTTGCAGGAGacaaatcaatcaaacaaaaaacataacatttagtAGCAGAACATACCAGCACACAGTGGGTTTGGCGTCCATCCGTCTGGTGTACATGTTGCTTCTTTTGCTGTTTCACGATATCCAGACTCAcatctgtatgtttttttcactCCAAGTCTCAAATCTCTTCTAAAGTAACCGCTTGGATAATACACATGCTGATTATGTGGAACTTCACAACTAATCTCTGAAACAggattaacattttttataacaacataaataacatttctctttaattttACCTGCACACTCAGTCATGTGATCCCAATCTCCACTATTTAGGCACGTGAATAATTTGCTGgtttcttttgtaaaaatgaGCCAGTGTCTCTCAGAGCAGGTAATCATCACTTTCTCTCCAGCTTTGAAAATAGTTTTCCCCTCTGGATAGATGCTGATTACTCCTAATTTAGTTGTCTTCAGCTCACAAGTTACTTCTGTTGAAGACATTATTATGCAGAACTAAGACTAAGGGTAAGAAAAGAACATTGAAAAAAACCGCACTGAAACTGTTACTGAAAATGCTTTGACTTTGCAGGAGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU226867 lncRNA upstream 1688 15827770 ~ 15831091 (+) True G153231
TU226872 lncRNA upstream 18693 15795830 ~ 15814086 (+) True G153233
TU226887 lncRNA upstream 30620 15795439 ~ 15802159 (+) True G153244
TU226878 lncRNA upstream 65223 15766721 ~ 15767556 (+) True G153239
TU226876 lncRNA upstream 70111 15760505 ~ 15762668 (+) True G153237
TU226822 lncRNA downstream 38521 15891038 ~ 15893138 (+) False LOC122327891
XR_006247733.1 lncRNA downstream 38567 15891084 ~ 15893130 (+) False LOC122327891
TU227008 lncRNA downstream 128605 15981122 ~ 15981346 (+) True G153320
TU227009 lncRNA downstream 130075 15982592 ~ 15982822 (+) True G153321
TU227020 lncRNA downstream 225756 16078273 ~ 16078868 (+) False LOC122327825
XM_043223394.1 mRNA upstream 80292 15735901 ~ 15752487 (+) True aspm
XM_043223769.1 mRNA upstream 120693 15623095 ~ 15712086 (+) False dennd1b
XM_043222434.1 mRNA downstream 26737 15879254 ~ 15886245 (+) True LOC122327224
XM_043222435.1 mRNA downstream 48615 15901132 ~ 15938182 (+) True LOC122327226
XM_043223557.1 mRNA downstream 91216 15943733 ~ 15956310 (+) True LOC122327890
XM_043223556.1 mRNA downstream 91216 15943733 ~ 15955960 (+) False LOC122327890
XM_043223458.1 mRNA downstream 225064 16077581 ~ 16078895 (+) True LOC122327825
TU226683 other upstream 615837 15212458 ~ 15216942 (+) False kif14
TU226184 other upstream 1140971 14686504 ~ 14691808 (+) True G152808
TU226124 other upstream 1370119 14458149 ~ 14462660 (+) True G152767
TU226044 other upstream 1790258 14040724 ~ 14042521 (+) False LOC122327219
XR_006247779.1 other upstream 1865554 13967107 ~ 13967225 (+) True LOC122328230
TU227010 other downstream 152047 16004564 ~ 16035615 (+) True G153322
unassigned_transcript_2545 other downstream 269923 16122440 ~ 16122512 (+) True trnaa-agc_18
unassigned_transcript_2548 other downstream 274019 16126536 ~ 16126608 (+) True trnaa-agc_19
unassigned_transcript_2549 other downstream 275393 16127910 ~ 16127982 (+) True trnaa-agc_20
unassigned_transcript_2551 other downstream 276769 16129286 ~ 16129358 (+) True trnaa-agc_21

Expression Profile