RNA id: TU226851


Basic Information

Item Value
RNA id TU226851
length 401
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id LOC122327891
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 15773705 ~ 15893138 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCAGCACACAGTGGGTTTGGTGTCCATCCGTCTCGTGTACATGTGGGTTTGGTGTCCATCCGTCTCGTGTACATGTAGCCTCTTCTGCCATTTTCTCATACCCAGACTCACAATGGTAAGATCTTCTTGCTTCAAATTTCATTTCTCCTCTGAAGTAATCAGATGGTCTAAACACATGCTGGCCGAGTGGAACTTCACATCTAatctctgaaaacattttttttaactaaatttttttaatggttactCACAGTTTTTGAAACTATGGATCCAGTTCTCAAAACTCTacacacaaaatcacacacGACATGCAGAACATCACACATATCCTGCATTagcaaacacttattttaaaatgttatttttgagtAGTAACTCCACTCACAATATGTGTGTATCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU226878 lncRNA upstream 6149 15766721 ~ 15767556 (+) True G153239
TU226876 lncRNA upstream 11037 15760505 ~ 15762668 (+) True G153237
TU226811 lncRNA upstream 39052 15729777 ~ 15734653 (+) True G153227
TU226801 lncRNA upstream 149935 15623093 ~ 15623770 (+) False dennd1b
TU226742 lncRNA upstream 257553 15468050 ~ 15516152 (+) True G153182
TU226875 lncRNA downstream 862 15835260 ~ 15836754 (+) True G153236
TU226822 lncRNA downstream 56640 15891038 ~ 15893138 (+) False LOC122327891
XR_006247733.1 lncRNA downstream 56686 15891084 ~ 15893130 (+) False LOC122327891
TU227008 lncRNA downstream 146724 15981122 ~ 15981346 (+) True G153320
TU227009 lncRNA downstream 148194 15982592 ~ 15982822 (+) True G153321
XM_043223394.1 mRNA upstream 21218 15735901 ~ 15752487 (+) True aspm
XM_043223769.1 mRNA upstream 61619 15623095 ~ 15712086 (+) False dennd1b
XM_043222434.1 mRNA downstream 44856 15879254 ~ 15886245 (+) True LOC122327224
XM_043222435.1 mRNA downstream 66734 15901132 ~ 15938182 (+) True LOC122327226
XM_043223557.1 mRNA downstream 109335 15943733 ~ 15956310 (+) True LOC122327890
XM_043223556.1 mRNA downstream 109335 15943733 ~ 15955960 (+) False LOC122327890
XM_043223458.1 mRNA downstream 243183 16077581 ~ 16078895 (+) True LOC122327825
TU226683 other upstream 556763 15212458 ~ 15216942 (+) False kif14
TU226184 other upstream 1081897 14686504 ~ 14691808 (+) True G152808
TU226124 other upstream 1311045 14458149 ~ 14462660 (+) True G152767
TU226044 other upstream 1731184 14040724 ~ 14042521 (+) False LOC122327219
XR_006247779.1 other upstream 1806480 13967107 ~ 13967225 (+) True LOC122328230
TU227010 other downstream 170166 16004564 ~ 16035615 (+) True G153322
unassigned_transcript_2545 other downstream 288042 16122440 ~ 16122512 (+) True trnaa-agc_18
unassigned_transcript_2548 other downstream 292138 16126536 ~ 16126608 (+) True trnaa-agc_19
unassigned_transcript_2549 other downstream 293512 16127910 ~ 16127982 (+) True trnaa-agc_20
unassigned_transcript_2551 other downstream 294888 16129286 ~ 16129358 (+) True trnaa-agc_21

Expression Profile