RNA id: XR_006247733.1


Basic Information

Item Value
RNA id XR_006247733.1
length 470
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id LOC122327891
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 15773705 ~ 15893138 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGAAAGTGATGATTACCTGCTCTGAGAGACACTGGCtcatttttacaaaagaaacCAGCAAATTATTCACGTGCCTAAATAGTGGAGATTGGGATCACATGACTGAGTGTGCAGAGATTAGTTGTGAAGTTCCACATAATCAGCATGTGTATTATCCAAGCGGTTACTTTAGAAGAGATTTGAGACTTGGagtgaaaaaaacatacagatgTGAGTCTGGATATCGTGAAACAGCAAAAGAAGCAACATGTACACCAGACGGATGGACGCCAAACCCACTGTGTGCTGttgcttattagtgtAGCGTGTCTGTACACGAAGACAACACAAGGATGAGATCCAGCCCTGGTTTTAATCTGATCAGTGAATCACAGGCGACAGAGGCACGTACAGGAAAATCGACAGCCTGTGGCTATtacataaagaaacaaacaaaccaaaaacaattacgtggaaataaaactgatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU226825 lncRNA upstream 38567 15832779 ~ 15852517 (+) True LOC122327891
TU226835 lncRNA upstream 38650 15832779 ~ 15852434 (+) False LOC122327891
TU226875 lncRNA upstream 54330 15835260 ~ 15836754 (+) True G153236
TU226854 lncRNA upstream 55647 15832779 ~ 15835437 (+) False LOC122327891
TU226837 lncRNA upstream 55647 15834027 ~ 15835437 (+) False LOC122327891
TU227008 lncRNA downstream 87992 15981122 ~ 15981346 (+) True G153320
TU227009 lncRNA downstream 89462 15982592 ~ 15982822 (+) True G153321
TU227020 lncRNA downstream 185143 16078273 ~ 16078868 (+) False LOC122327825
TU227040 lncRNA downstream 270253 16163383 ~ 16168121 (+) False LOC122327131
TU227041 lncRNA downstream 270253 16163383 ~ 16164196 (+) False LOC122327131
XM_043222434.1 mRNA upstream 4839 15879254 ~ 15886245 (+) True LOC122327224
XM_043223394.1 mRNA upstream 138597 15735901 ~ 15752487 (+) True aspm
XM_043223767.1 mRNA upstream 178998 15623095 ~ 15712086 (+) False dennd1b
XM_043222435.1 mRNA downstream 8002 15901132 ~ 15938182 (+) True LOC122327226
XM_043223557.1 mRNA downstream 50603 15943733 ~ 15956310 (+) True LOC122327890
XM_043223556.1 mRNA downstream 50603 15943733 ~ 15955960 (+) False LOC122327890
XM_043223458.1 mRNA downstream 184451 16077581 ~ 16078895 (+) True LOC122327825
XM_043222436.1 mRNA downstream 205601 16098731 ~ 16099807 (+) True LOC122327228
TU226683 other upstream 674142 15212458 ~ 15216942 (+) False kif14
TU226184 other upstream 1199276 14686504 ~ 14691808 (+) True G152808
TU226124 other upstream 1428424 14458149 ~ 14462660 (+) True G152767
TU226044 other upstream 1848563 14040724 ~ 14042521 (+) False LOC122327219
XR_006247779.1 other upstream 1923859 13967107 ~ 13967225 (+) True LOC122328230
TU227010 other downstream 111434 16004564 ~ 16035615 (+) True G153322
unassigned_transcript_2545 other downstream 229310 16122440 ~ 16122512 (+) True trnaa-agc_18
unassigned_transcript_2548 other downstream 233406 16126536 ~ 16126608 (+) True trnaa-agc_19
unassigned_transcript_2549 other downstream 234780 16127910 ~ 16127982 (+) True trnaa-agc_20
unassigned_transcript_2551 other downstream 236156 16129286 ~ 16129358 (+) True trnaa-agc_21

Expression Profile