RNA id: TU226875


Basic Information

Item Value
RNA id TU226875
length 261
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G153236
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 15835260 ~ 15836754 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TACCAGCACACAGTGGGTTCGGTGTCCATCCGTCTCGTCACACAGTGGGTTCGGTGTCCATCCGTCTCGTGTACATGTGGCCACTTCTGCTGTTTCTCGATATCCAGACTCACAACGGTAAGATCTTCTTGCTTGAAATGTCATTTCTCCTCTGAAGTAATTGTCTGGTCTAGACACATGCTGGTCAAGTGGAACTTCACATCTAATCTCTGAAACAagattaaggtttttttttttaaggttacatcatttagatttttc

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU226851 lncRNA upstream 862 15773705 ~ 15834398 (+) False LOC122327891
TU226821 lncRNA upstream 862 15785658 ~ 15834398 (+) False LOC122327891
TU226832 lncRNA upstream 2113 15831898 ~ 15833147 (+) False LOC122327891
TU226867 lncRNA upstream 4169 15827770 ~ 15831091 (+) True G153231
TU226872 lncRNA upstream 21174 15795830 ~ 15814086 (+) True G153233
TU226822 lncRNA downstream 54284 15891038 ~ 15893138 (+) False LOC122327891
XR_006247733.1 lncRNA downstream 54330 15891084 ~ 15893130 (+) False LOC122327891
TU227008 lncRNA downstream 144368 15981122 ~ 15981346 (+) True G153320
TU227009 lncRNA downstream 145838 15982592 ~ 15982822 (+) True G153321
TU227020 lncRNA downstream 241519 16078273 ~ 16078868 (+) False LOC122327825
XM_043223394.1 mRNA upstream 82773 15735901 ~ 15752487 (+) True aspm
XM_043223769.1 mRNA upstream 123174 15623095 ~ 15712086 (+) False dennd1b
XM_043222434.1 mRNA downstream 42500 15879254 ~ 15886245 (+) True LOC122327224
XM_043222435.1 mRNA downstream 64378 15901132 ~ 15938182 (+) True LOC122327226
XM_043223557.1 mRNA downstream 106979 15943733 ~ 15956310 (+) True LOC122327890
XM_043223556.1 mRNA downstream 106979 15943733 ~ 15955960 (+) False LOC122327890
XM_043223458.1 mRNA downstream 240827 16077581 ~ 16078895 (+) True LOC122327825
TU226683 other upstream 618318 15212458 ~ 15216942 (+) False kif14
TU226184 other upstream 1143452 14686504 ~ 14691808 (+) True G152808
TU226124 other upstream 1372600 14458149 ~ 14462660 (+) True G152767
TU226044 other upstream 1792739 14040724 ~ 14042521 (+) False LOC122327219
XR_006247779.1 other upstream 1868035 13967107 ~ 13967225 (+) True LOC122328230
TU227010 other downstream 167810 16004564 ~ 16035615 (+) True G153322
unassigned_transcript_2545 other downstream 285686 16122440 ~ 16122512 (+) True trnaa-agc_18
unassigned_transcript_2548 other downstream 289782 16126536 ~ 16126608 (+) True trnaa-agc_19
unassigned_transcript_2549 other downstream 291156 16127910 ~ 16127982 (+) True trnaa-agc_20
unassigned_transcript_2551 other downstream 292532 16129286 ~ 16129358 (+) True trnaa-agc_21

Expression Profile