RNA id: TU227009



Basic Information


Item Value
RNA id TU227009
length 231
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G153321
representative True

Chromosome Information


Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 15982592 ~ 15982822 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ggggtcagttctcctctgaccggatgcccagcacttaacttccagttcaattttaaacgcagctgtgtcaggtagtgtaaatgacttagtgtgtgtgtgtgtgtgtgtgtgcatcaggatctggtgatcggtccacggggcgcatctaggtgttctggtctctgatgaacataatctctgggtgctgatccaccacctagtctggatacaaactgtgaaaacagattgaga

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU227008 lncRNA upstream 1246 15981122 ~ 15981346 (+) True G153320
TU226822 lncRNA upstream 89454 15891038 ~ 15893138 (+) False LOC122327891
XR_006247733.1 lncRNA upstream 89462 15891084 ~ 15893130 (+) False LOC122327891
TU226835 lncRNA upstream 130158 15832779 ~ 15852434 (+) False LOC122327891
TU227020 lncRNA downstream 95451 16078273 ~ 16078868 (+) False LOC122327825
TU227040 lncRNA downstream 180561 16163383 ~ 16168121 (+) False LOC122327131
TU227041 lncRNA downstream 180561 16163383 ~ 16164196 (+) False LOC122327131
TU227043 lncRNA downstream 188071 16170893 ~ 16171468 (+) False LOC122327131
TU227077 lncRNA downstream 267618 16250440 ~ 16250973 (+) True G153364
XM_043223557.1 mRNA upstream 26282 15943733 ~ 15956310 (+) True LOC122327890
XM_043223556.1 mRNA upstream 26632 15943733 ~ 15955960 (+) False LOC122327890
XM_043222435.1 mRNA upstream 44410 15901132 ~ 15938182 (+) True LOC122327226
XM_043222434.1 mRNA upstream 96347 15879254 ~ 15886245 (+) True LOC122327224
XM_043223394.1 mRNA upstream 230105 15735901 ~ 15752487 (+) True aspm
XM_043223458.1 mRNA downstream 94759 16077581 ~ 16078895 (+) True LOC122327825
XM_043222436.1 mRNA downstream 115909 16098731 ~ 16099807 (+) True LOC122327228
XM_043222437.1 mRNA downstream 170320 16153142 ~ 16155551 (+) True LOC122327230
XM_043222314.1 mRNA downstream 180567 16163389 ~ 16171629 (+) True LOC122327131
XM_043222315.1 mRNA downstream 180567 16163389 ~ 16171629 (+) False LOC122327131
TU226683 other upstream 765650 15212458 ~ 15216942 (+) False kif14
TU226184 other upstream 1290784 14686504 ~ 14691808 (+) True G152808
TU226124 other upstream 1519932 14458149 ~ 14462660 (+) True G152767
TU226044 other upstream 1940071 14040724 ~ 14042521 (+) False LOC122327219
XR_006247779.1 other upstream 2015367 13967107 ~ 13967225 (+) True LOC122328230
TU227010 other downstream 21742 16004564 ~ 16035615 (+) True G153322
unassigned_transcript_2545 other downstream 139618 16122440 ~ 16122512 (+) True trnaa-agc_18
unassigned_transcript_2548 other downstream 143714 16126536 ~ 16126608 (+) True trnaa-agc_19
unassigned_transcript_2549 other downstream 145088 16127910 ~ 16127982 (+) True trnaa-agc_20
unassigned_transcript_2551 other downstream 146464 16129286 ~ 16129358 (+) True trnaa-agc_21

Expression Profile