RNA id: TU227041


Basic Information

Item Value
RNA id TU227041
length 397
lncRNA type sense_over
GC content 0.36
exon number 2
gene id LOC122327131
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 16163383 ~ 16171629 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTTGCTCCTGCATCTTCTGATTCGACTGAAGCGAGGGttctgtttaaaacatttaacgtGTAGTAACCGTTCATCTTTAAAGTTTTACATGCCATacataaattactttattatttaccGTAAAGTACAAACACGAGTAACACAGAAGAACTGAGTGAGGTCTATGTGACACAGTTTTATAAAGATGCCGTTTATTAAAGAAGAGTGTGAAGATGTGAAAACTGAAGAAGCATTCAGAGTTAAACAtgaagataaagaaagaaaatgtattaaagggGAGAGAGAAGACATATGCATTAAAGAAGTATTCAGTCTGAAAGAtactgaggaacaaacaggtcAGTTTTCATTCTCATGGCCTAACTCACTCATTTCATCCTTGTTCAAATGTCCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227020 lncRNA upstream 84515 16078273 ~ 16078868 (+) False LOC122327825
TU227009 lncRNA upstream 180561 15982592 ~ 15982822 (+) True G153321
TU227008 lncRNA upstream 182037 15981122 ~ 15981346 (+) True G153320
TU226822 lncRNA upstream 270245 15891038 ~ 15893138 (+) False LOC122327891
TU227043 lncRNA downstream 6697 16170893 ~ 16171468 (+) False LOC122327131
TU227077 lncRNA downstream 86244 16250440 ~ 16250973 (+) True G153364
TU227140 lncRNA downstream 139535 16303731 ~ 16305650 (+) True G153399
TU227176 lncRNA downstream 256456 16420652 ~ 16481470 (+) True G153418
TU227196 lncRNA downstream 337558 16501754 ~ 16502104 (+) True G153434
XM_043222437.1 mRNA upstream 7832 16153142 ~ 16155551 (+) True LOC122327230
XM_043222436.1 mRNA upstream 63576 16098731 ~ 16099807 (+) True LOC122327228
XM_043223458.1 mRNA upstream 84488 16077581 ~ 16078895 (+) True LOC122327825
XM_043223557.1 mRNA upstream 207073 15943733 ~ 15956310 (+) True LOC122327890
XM_043223165.1 mRNA downstream 69411 16233607 ~ 16237021 (+) True LOC122327679
XM_043223756.1 mRNA downstream 76967 16241163 ~ 16244542 (+) True LOC122328055
XM_043223757.1 mRNA downstream 76967 16241163 ~ 16244542 (+) False LOC122328055
XM_043222222.1 mRNA downstream 153191 16317387 ~ 16319378 (+) True rpl32
XM_043223195.1 mRNA downstream 165529 16329725 ~ 16337118 (+) True sec13
unassigned_transcript_2576 other upstream 13539 16149772 ~ 16149844 (+) True trnaa-agc_28
unassigned_transcript_2572 other upstream 16246 16147065 ~ 16147137 (+) True trnaa-agc_27
unassigned_transcript_2570 other upstream 17631 16145680 ~ 16145752 (+) True trnaa-agc_26
unassigned_transcript_2563 other upstream 24461 16138850 ~ 16138922 (+) True trnaa-agc_25
unassigned_transcript_2559 other upstream 27191 16136120 ~ 16136192 (+) True trnaa-agc_24
TU227165 other downstream 153265 16317461 ~ 16386176 (+) False rpl32
TU227194 other downstream 329506 16493702 ~ 16499413 (+) True G153432
XR_006247623.1 other downstream 436436 16600632 ~ 16746075 (+) False dock3
TU227461 other downstream 1251257 17415453 ~ 17419233 (+) False tsc22d2
TU227593 other downstream 1762155 17926351 ~ 17927244 (+) True G153741

Expression Profile