RNA id: TU227176


Basic Information

Item Value
RNA id TU227176
length 2205
lncRNA type sense_over
GC content 0.39
exon number 2
gene id G153418
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 16420652 ~ 16481470 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCTTTAGCTGTTCTCTCTTACATTTATAAACACCGCCCCCTTTAGCTGTTCTTCAAAACTGGAAGGGTTTCAAGAGACGCACAACAGCGGGAAACCAGTCTCTGTTATTAAAACACACCCTGAGACTGCACATTAATCTCTGTATTGCTAAAAATTGTGCCTCTTtcaacattaacatttacattttttttttttctgtgatgaaGCATCCCAAATGTACCAAAGTAGAAGTTGTCGAGTTAAATTGAGCATCTCCCTTTGCGATTGGCTACGGTGTTAACTTGGCCAAGTCAAAAGAAATCATATTAAATCCAATAAATTTAATCCAAAACATTGGCATAATCCTTAAAATTAAGCTTTactttctcatttttaaaaaagtataaattgtCACAGTAAGTAGATCTGCATTGAGTTTTTGGTGTTAATGCAGCATACCATTTACGGTAGCTTAAATTGGCCCCTATTCATtgtttctgaaatattacaacagCTTAAAAATACGCAATTCCACACTTCCAAAGTACCAACTTTCTGAAAGACAGGTGAAGAAACAATGCATTTCGTTCTACAAAGTATTGCACATTACAGTTCGCAGCAAGCTTTTCTTTGTCGATTAACAGTTGTGGACGAGATCTATTGGTAATTGCTGGACAGAACAGTCAAATACAGTGATATTTTTGAATACAAAAGGCAAATGTgattggaaataaaaacaaacagatttgATACAAAATGCACGAAACTACCCTGAATCTACGTGGATTTTCGATCTTGCAGGCAGCTTAACGTTCTGACTTCCCAAAATCAGAATGTGTTTGGTGACTGTGAATCAATGAGGGCGGCGTACGGATAGCACGGCGGATGTCCTTCGCAAACTAGAAAGTTGCGGCTAACGTCTCCGCTACAAACGTCGATCGCCGTGAACGCATCTTAACAACGGGGAAGAGACTGCTAAAAATGAGTGTGCTGCGCTTTTCCGAAATCTTGCGACGCCGGAAAGTTCACAACAACGTTCTGTTAGACCTTCCGTTGTGGAACTTGAAATCCACAAATCTGTTATCATGCATCCGGGCCAGTAGTTGGCGATGTCACTTGGTAAAGAAACACTACGCACTTACGAACTGAACAAGCTCGTGGCGTTACTACTTTCACAAATGTGCGTTTTAATAGTTTACACGGAGACGCTAATGCTATTCCttattaaaaacttttcaacaagtatgcatttaaaaagaagaacTAATTCGGTTAAATGTTTTGGACCCCTTTGACTTTTGTTGTATAGACAAAAATGCCAAATCATTCTTCATCCGTTTTGCAGAAAaatgaaagtcatacaggtttggaacgaatttcaattttttttcgttctttctttcgtAAACTATCCATTTAAATGGTGGGTGCACCAGTATGGAGAATGTAGTGTCCTTAGTGGTatagtgcattaaaaacaagcagTGTTAACGGCTCGGTTCTTCGGGACAGCACCATCTCCAGTCTAAACAGTTTGTCGGGACACACTTAAAGAGCTACATTAATGCATGACCACTTCTATCCCTAAAAAGACGACTATTTCACGTTTGGGGAGGATGACATCTTTGTACACGAATCTGTACTTTTCGCAATTCACGTTTCCGGAGccctttgtgtttttgtttttttttcccatgattCTCGATTCTcttacaaatatacacagcttAGTTTGATTTCGATATGTACAAGatagaagttaaaaaaaatagaacggGCATGGTTCTACGTTCAGGATACTGCTGTTTGCGATCTGTTCTCTGTCTATTAACAGCGacaataatagtaaatataatagtattatgataaaaatattaaaaatacagacagaAAAATTTAACTTTCTctgtagaaaacaaaaaaaacaaaacaaggacTCCTAGTGCAGATGCGTAGCAATGTAAACCTGGTCCTACGACTATGTCAAAAGTTACagagtatatttttaatatatgcatatagaatcacatatatatgtaatggaAAAGCAGGTCATTGAATCCTCTCACAGAGAGCGTTCACATCATAGTCTCTACGATGGTGTGGGTGGGCTTCGTCAAGCCTCCGTTCCAGTTGGGGTCCAGCGGCTGCGCCAGCTCATTGCATTTAGGCTGGTAGTCTTGGGGACAAGAACTGGCTCCTCCCCTCACGGGTGCTGCCACCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227140 lncRNA upstream 115002 16303731 ~ 16305650 (+) True G153399
TU227077 lncRNA upstream 169679 16250440 ~ 16250973 (+) True G153364
TU227043 lncRNA upstream 249184 16170893 ~ 16171468 (+) False LOC122327131
TU227040 lncRNA upstream 252531 16163383 ~ 16168121 (+) False LOC122327131
TU227041 lncRNA upstream 256456 16163383 ~ 16164196 (+) False LOC122327131
TU227196 lncRNA downstream 20284 16501754 ~ 16502104 (+) True G153434
XR_006247619.1 lncRNA downstream 41160 16522630 ~ 16526785 (+) True LOC122327176
TU227198 lncRNA downstream 41263 16522733 ~ 16526808 (+) False LOC122327176
XR_006247769.1 lncRNA downstream 53549 16535019 ~ 16545350 (+) True LOC122328065
XR_006247770.1 lncRNA downstream 53549 16535019 ~ 16545350 (+) False LOC122328065
XM_043223195.1 mRNA upstream 83534 16329725 ~ 16337118 (+) True sec13
XM_043222222.1 mRNA upstream 101274 16317387 ~ 16319378 (+) True rpl32
XM_043223756.1 mRNA upstream 176110 16241163 ~ 16244542 (+) True LOC122328055
XM_043223757.1 mRNA upstream 176110 16241163 ~ 16244542 (+) False LOC122328055
XM_043223165.1 mRNA upstream 183631 16233607 ~ 16237021 (+) True LOC122327679
XM_043222472.1 mRNA downstream 119160 16600630 ~ 16746196 (+) False dock3
XM_043222473.1 mRNA downstream 119164 16600634 ~ 16746142 (+) False dock3
XM_043222470.1 mRNA downstream 119180 16600650 ~ 16749928 (+) False dock3
XM_043222469.1 mRNA downstream 119191 16600661 ~ 16749928 (+) False dock3
XM_043222466.1 mRNA downstream 119192 16600662 ~ 16749928 (+) True dock3
TU227165 other upstream 34476 16317461 ~ 16386176 (+) False rpl32
unassigned_transcript_2576 other upstream 270808 16149772 ~ 16149844 (+) True trnaa-agc_28
unassigned_transcript_2572 other upstream 273515 16147065 ~ 16147137 (+) True trnaa-agc_27
unassigned_transcript_2570 other upstream 274900 16145680 ~ 16145752 (+) True trnaa-agc_26
unassigned_transcript_2563 other upstream 281730 16138850 ~ 16138922 (+) True trnaa-agc_25
TU227194 other downstream 12232 16493702 ~ 16499413 (+) True G153432
XR_006247623.1 other downstream 119162 16600632 ~ 16746075 (+) False dock3
TU227461 other downstream 933983 17415453 ~ 17419233 (+) False tsc22d2
TU227593 other downstream 1444881 17926351 ~ 17927244 (+) True G153741

Expression Profile