RNA id: TU227196


Basic Information

Item Value
RNA id TU227196
length 351
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G153434
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 16501754 ~ 16502104 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gGAAATCGAATGCAGTTATTAACACACGCaaacaaatgatttattgtCTAAGCCTGTGTTGTCCGGTGAAACAGAATATAAGTCTGAATCCCAAATGATCTGGCAATTCTTCATCCGTTTTATGTGCAAAATAATGGATTAAATATACTCCCAATAAATAGAATGCATCACAATATATTTCACTTAGAGTTTGCATTTCTTTGTTTACTGGATCATAACCTACACAGTGAAAGTCGAATAGGCTTCTTGTAGCACTTCCTGACTGAAGTCAAAAGTCCTGCAGTGCTGGTGTTTTTTGCAGAAAGAGGATCTCCACAGAGCGCCGGTGTCTGAAACATGTGAACGCTTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227176 lncRNA upstream 20284 16420652 ~ 16481470 (+) True G153418
TU227140 lncRNA upstream 196104 16303731 ~ 16305650 (+) True G153399
TU227077 lncRNA upstream 250781 16250440 ~ 16250973 (+) True G153364
TU227043 lncRNA upstream 330286 16170893 ~ 16171468 (+) False LOC122327131
TU227040 lncRNA upstream 333633 16163383 ~ 16168121 (+) False LOC122327131
XR_006247619.1 lncRNA downstream 20526 16522630 ~ 16526785 (+) True LOC122327176
TU227198 lncRNA downstream 20629 16522733 ~ 16526808 (+) False LOC122327176
XR_006247769.1 lncRNA downstream 32915 16535019 ~ 16545350 (+) True LOC122328065
XR_006247770.1 lncRNA downstream 32915 16535019 ~ 16545350 (+) False LOC122328065
TU227200 lncRNA downstream 32917 16535021 ~ 16536427 (+) False LOC122328065
XM_043222445.1 mRNA upstream 24143 16382185 ~ 16477611 (+) False grip2b
XM_043222444.1 mRNA upstream 24143 16382186 ~ 16477611 (+) True grip2b
XM_043223195.1 mRNA upstream 164636 16329725 ~ 16337118 (+) True sec13
XM_043222222.1 mRNA upstream 182376 16317387 ~ 16319378 (+) True rpl32
XM_043223756.1 mRNA upstream 257212 16241163 ~ 16244542 (+) True LOC122328055
XM_043222472.1 mRNA downstream 98526 16600630 ~ 16746196 (+) False dock3
XM_043222473.1 mRNA downstream 98530 16600634 ~ 16746142 (+) False dock3
XM_043222470.1 mRNA downstream 98546 16600650 ~ 16749928 (+) False dock3
XM_043222469.1 mRNA downstream 98557 16600661 ~ 16749928 (+) False dock3
XM_043222466.1 mRNA downstream 98558 16600662 ~ 16749928 (+) True dock3
TU227194 other upstream 2341 16493702 ~ 16499413 (+) True G153432
TU227165 other upstream 115578 16317461 ~ 16386176 (+) False rpl32
unassigned_transcript_2576 other upstream 351910 16149772 ~ 16149844 (+) True trnaa-agc_28
unassigned_transcript_2572 other upstream 354617 16147065 ~ 16147137 (+) True trnaa-agc_27
unassigned_transcript_2570 other upstream 356002 16145680 ~ 16145752 (+) True trnaa-agc_26
XR_006247623.1 other downstream 98528 16600632 ~ 16746075 (+) False dock3
TU227461 other downstream 913349 17415453 ~ 17419233 (+) False tsc22d2
TU227593 other downstream 1424247 17926351 ~ 17927244 (+) True G153741

Expression Profile