RNA id: TU227200


Basic Information

Item Value
RNA id TU227200
length 327
lncRNA type inter_gene
GC content 0.34
exon number 3
gene id LOC122328065
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 16535019 ~ 16545350 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGCGCAGCAGTTAGCATGGACATCACTAAGACATTGCACAGACTGTTCCACTGGCACAAAAGGTTGTTTCAGCAAATGATGAAAAGGATGCtctcagaagaagaagaagaagaagaagaagaagaagaagaagaagaactgaTTCTGATCATTCACATCATCTTTAAGGACGCTCACAGAAGATCAGATAATCACTGGGGTGCATCAAGGTTCGATACTGAGccctattaaatattatataattcttAATAAAGTGggaacatttataacatttgcattttaattatataattaaataattgtccATTAACAAATGCTAATTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227198 lncRNA upstream 8213 16522733 ~ 16526808 (+) False LOC122327176
XR_006247619.1 lncRNA upstream 8236 16522630 ~ 16526785 (+) True LOC122327176
TU227196 lncRNA upstream 32917 16501754 ~ 16502104 (+) True G153434
TU227176 lncRNA upstream 53551 16420652 ~ 16481470 (+) True G153418
TU227140 lncRNA upstream 229371 16303731 ~ 16305650 (+) True G153399
TU227275 lncRNA downstream 18506 16554933 ~ 16556610 (+) True G153501
TU227276 lncRNA downstream 18506 16554933 ~ 16556610 (+) False G153501
TU227279 lncRNA downstream 29625 16566052 ~ 16566670 (+) True G153504
TU227368 lncRNA downstream 221368 16757795 ~ 16758127 (+) True G153568
TU227369 lncRNA downstream 222718 16759145 ~ 16759580 (+) True G153569
XM_043222445.1 mRNA upstream 57410 16382185 ~ 16477611 (+) False grip2b
XM_043222444.1 mRNA upstream 57410 16382186 ~ 16477611 (+) True grip2b
XM_043223195.1 mRNA upstream 197903 16329725 ~ 16337118 (+) True sec13
XM_043222222.1 mRNA upstream 215643 16317387 ~ 16319378 (+) True rpl32
XM_043223757.1 mRNA upstream 290479 16241163 ~ 16244542 (+) False LOC122328055
XM_043222472.1 mRNA downstream 64203 16600630 ~ 16746196 (+) False dock3
XM_043222473.1 mRNA downstream 64207 16600634 ~ 16746142 (+) False dock3
XM_043222470.1 mRNA downstream 64223 16600650 ~ 16749928 (+) False dock3
XM_043222469.1 mRNA downstream 64234 16600661 ~ 16749928 (+) False dock3
XM_043222466.1 mRNA downstream 64235 16600662 ~ 16749928 (+) True dock3
TU227194 other upstream 35608 16493702 ~ 16499413 (+) True G153432
TU227165 other upstream 148845 16317461 ~ 16386176 (+) False rpl32
unassigned_transcript_2576 other upstream 385177 16149772 ~ 16149844 (+) True trnaa-agc_28
unassigned_transcript_2572 other upstream 387884 16147065 ~ 16147137 (+) True trnaa-agc_27
unassigned_transcript_2570 other upstream 389269 16145680 ~ 16145752 (+) True trnaa-agc_26
XR_006247623.1 other downstream 64205 16600632 ~ 16746075 (+) False dock3
TU227461 other downstream 879026 17415453 ~ 17419233 (+) False tsc22d2
TU227593 other downstream 1389924 17926351 ~ 17927244 (+) True G153741

Expression Profile