RNA id: TU227383


Basic Information

Item Value
RNA id TU227383
length 291
lncRNA type inter_gene
GC content 0.58
exon number 2
gene id G153583
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 16805182 ~ 16805608 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAATCGCGCGCTCCGTTACGTTTCGTTACCGTAATTGCGGCGGAGTTAAGGACGGTTCGGCGGATCGCTATCTTTTCTGAATCAATTTCCCCAGCTGACAGCTCGTGCCTCTACCACGACTTAAAGGTCAATAAATGCCTCCGAGTGCTTCGTCGAAGCAGCTCTGTGTGATGACTGACAGCTCGGCGGCGGTGACCTTGGACACCGAGGGGCTCTGGCCGCCCGAGATTTACGCGACGGCTCTGAAAACGGCTCCACACCGGGACGTCACGAGCAGGACGGCAGTGAACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227369 lncRNA upstream 45602 16759145 ~ 16759580 (+) True G153569
TU227368 lncRNA upstream 47055 16757795 ~ 16758127 (+) True G153568
TU227279 lncRNA upstream 238512 16566052 ~ 16566670 (+) True G153504
TU227275 lncRNA upstream 248572 16554933 ~ 16556610 (+) True G153501
TU227276 lncRNA upstream 248572 16554933 ~ 16556610 (+) False G153501
TU227415 lncRNA downstream 266906 17072514 ~ 17072936 (+) True G153610
TU227465 lncRNA downstream 614116 17419724 ~ 17419944 (+) True G153645
TU227470 lncRNA downstream 636265 17441873 ~ 17442179 (+) True G153647
TU227476 lncRNA downstream 666292 17471900 ~ 17472846 (+) True G153653
TU227477 lncRNA downstream 667633 17473241 ~ 17474600 (+) True G153654
XM_043223197.1 mRNA upstream 48252 16752903 ~ 16756930 (+) True rbm15b
XM_043223198.1 mRNA upstream 52428 16750713 ~ 16752754 (+) True manf
XM_043222468.1 mRNA upstream 55254 16600689 ~ 16749928 (+) False dock3
XM_043222369.1 mRNA downstream 235054 17040662 ~ 17069967 (+) True dag1
XM_043222370.1 mRNA downstream 235054 17040662 ~ 17069967 (+) False dag1
XM_043223130.1 mRNA downstream 548209 17353817 ~ 17369897 (+) False srfa
XM_043223128.1 mRNA downstream 548254 17353862 ~ 17369897 (+) True srfa
XM_043223129.1 mRNA downstream 548272 17353880 ~ 17369897 (+) False srfa
XR_006247623.1 other upstream 59107 16600632 ~ 16746075 (+) False dock3
TU227194 other upstream 305769 16493702 ~ 16499413 (+) True G153432
TU227165 other upstream 419006 16317461 ~ 16386176 (+) False rpl32
unassigned_transcript_2576 other upstream 655338 16149772 ~ 16149844 (+) True trnaa-agc_28
unassigned_transcript_2572 other upstream 658045 16147065 ~ 16147137 (+) True trnaa-agc_27
TU227461 other downstream 609845 17415453 ~ 17419233 (+) False tsc22d2
TU227593 other downstream 1120743 17926351 ~ 17927244 (+) True G153741

Expression Profile