RNA id: TU227477


Basic Information

Item Value
RNA id TU227477
length 1360
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G153654
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 17473241 ~ 17474600 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AACTCAATTCGTGGACATGCAGTGATCTTATAGGATTTCAATTTCTGTTTCACATGGCAATTAAGAATAAAAACTCAGAATTgggaaaaaagagaattttttGGTGATGGAAAAAAGCTTCCATAAAATGGatgtcgaaaaaaaaaaactcaccttCAGAATCACAATATTGCTCATTGGGTTTCTTGCTTAAATGAACAAGTTTGGCGACATAGTTAAGGAAGAGCGTCTTCACCCACTGAGGTAAGGGTCCATAGTGAGTGGAGCCACATTGGATATTTATTATAAGAATTGTCTCCAGAAGACTGGCCACCATTAGAGCCAAGCAGAGGGAGAAAAAAGCATCTGGAAAAACATAGATACTGCttcatgaaatcatttaaaacacaaatacttcACATTTAGAATGATACATCTATACAAACTTATGAGAGGTAGGGAGTTTCCAGTGACGGGCAGCAGGTCGTTCATTAGCAGCAGGAATACAGTGTAACCCAAAATGAGGGTCATTTTGAAGGCAGAACGATCCACATTTTGAGGAGGCAGAAGAAAACTGAAAAGATCTACAGTAATAAGCAAGCAGCTGGGAATCAGGAGGTTCACCACGTACAGAGTCGCTCGACGCCTGAGGACGATCTAATAAAGGACAAAAGTAATTCAAACAACTTCAATTAGAATGcgatgcatttaataaaaatattattatattattaaatattagcaAATCCACAATTTCACAAGCTGCTGATTTTGTatgaattcataaaatgttatttgtggAAAATAATCTAATCAAGAAGGTCCATTCCTTAGTGAAGATTGAACAGACAGTAAAATTGCCTGCAGTTAGCCAAAACTTAAAATAGTAATGAATTGCCATGAGAGAATGTTGGGCTTGACTAACAATATTTTCTAGTTTAAATACAAGTTTTTTTATTGGAGTTAAAATGATAATACATAGTATGTAAGTGTGTCCCGCGAGGTATTCATTTCTTGAGGAGGTATCATAGGTTTTTCAGCAAGCATGTCGACCAGCTCCCACTCTCCTTTAGTTGCCATCACATTGAGAGAATTTTTGAATGCTTCCTCCACTGGTTCAGCAAAGGACAAGTGAACATCCAGCACTAAAGAGCAAACAAATTTTTGGGGTCTAGCAACATGGTAATAGTTATCAGTAAAATTTTATTCAGTCAGGATAACTTACCAGTGTGCTGGTATGAATTAAAGGTGAATGTGCAGTTTTGAATATCAAATGGAAAGGTATAGATGTCCAGGTTACAAGAACTGATGACATGAAATGGAAAATCATCCATTACCCTACCAGCATATTCAATGTAGAGGTAATATGTGTCTGGGACTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227476 lncRNA upstream 395 17471900 ~ 17472846 (+) True G153653
TU227470 lncRNA upstream 31062 17441873 ~ 17442179 (+) True G153647
TU227465 lncRNA upstream 53297 17419724 ~ 17419944 (+) True G153645
TU227415 lncRNA upstream 400305 17072514 ~ 17072936 (+) True G153610
TU227383 lncRNA upstream 667633 16805182 ~ 16805608 (+) True G153583
TU227589 lncRNA downstream 409013 17883613 ~ 17883921 (+) True G153737
TU227592 lncRNA downstream 412046 17886646 ~ 17886876 (+) True G153740
TU227595 lncRNA downstream 465281 17939881 ~ 17940860 (+) True G153743
XM_043223358.1 mRNA upstream 34327 17422118 ~ 17438914 (+) True rubcn
XM_043223360.1 mRNA upstream 34327 17422119 ~ 17438914 (+) False rubcn
XM_043223359.1 mRNA upstream 34327 17422120 ~ 17438914 (+) False rubcn
XM_043223184.1 mRNA upstream 53997 17399305 ~ 17419244 (+) True tsc22d2
XM_043223460.1 mRNA downstream 16144 17490744 ~ 17492655 (+) True dynlt2b
XM_043223761.1 mRNA downstream 35128 17509728 ~ 17520426 (+) True hykk.2
XM_043223760.1 mRNA downstream 41530 17516130 ~ 17520426 (+) True LOC122328058
XM_043223106.1 mRNA downstream 222275 17696875 ~ 17741017 (+) True LOC122327646
XM_043223108.1 mRNA downstream 222275 17696875 ~ 17741017 (+) False LOC122327646
TU227461 other upstream 54008 17415453 ~ 17419233 (+) False tsc22d2
XR_006247623.1 other upstream 727166 16600632 ~ 16746075 (+) False dock3
TU227194 other upstream 973828 16493702 ~ 16499413 (+) True G153432
TU227165 other upstream 1087065 16317461 ~ 16386176 (+) False rpl32
unassigned_transcript_2576 other upstream 1323397 16149772 ~ 16149844 (+) True trnaa-agc_28
TU227593 other downstream 451751 17926351 ~ 17927244 (+) True G153741

Expression Profile