RNA id: TU227593


Basic Information

Item Value
RNA id TU227593
length 894
RNA type TUCP
GC content 0.45
exon number 1
gene id G153741
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 17926351 ~ 17927244 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

caacaaatcccaaaaagttgggacaagtagcaataagaggctggaaaaagtaaatttaagcataacgaggagctggaagaccaattaacactaattaggtcaattggcaacatgattgggtaaaaaagagcttctcagagtggcagtgtctctcagaagccaagatgggtagaggatcaccaattcccacaatgttgcgcagaaagatagtggagcaatatcagaaaggtgttacccagcgaaaaattgcaaagactttgcatctatcatcatcaactgtgcataacatcatccaaagattcagagaatctggaacaatctctgtgagaaagggtcaaggccgtaaaaccatactggatgcccgtgatctccgggcccttaaacgacactgcaccacaaacaggaatgctactgtaaaggaaatcacagaatgggctcaggaatacttccagaaaccattgtcagtgaacacaatccaccgtgccatccgccgttgccagctgaaactctacagtgcaaagaagaagccatttctaagcaagatccacaagctcaggcgtttacactgggccagggatcatttaaaatggagtgtggcgaaatggaagactgttctgtggtcagacgagtcacgattcgaagttctttttggaaatctgggacgccatgtcatccggaccaaagaggacaaggacaacccaagttgttatcaacgctcggttcagaagcctgcatctctgatggtatggggttgcatgagtgcgtgtggcatgggcagcttgcatgtctggaaaggcaccatcaatgcagaaaaatatattcaggttctagaacaacatatgctcccatccagacatcatctttttcagggaagaccctgcatttttcaacaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227592 lncRNA upstream 39475 17886646 ~ 17886876 (+) True G153740
TU227589 lncRNA upstream 42430 17883613 ~ 17883921 (+) True G153737
TU227477 lncRNA upstream 451751 17473241 ~ 17474600 (+) True G153654
TU227476 lncRNA upstream 453505 17471900 ~ 17472846 (+) True G153653
TU227470 lncRNA upstream 484172 17441873 ~ 17442179 (+) True G153647
TU227595 lncRNA downstream 12637 17939881 ~ 17940860 (+) True G153743
XM_043223106.1 mRNA upstream 185334 17696875 ~ 17741017 (+) True LOC122327646
XM_043223108.1 mRNA upstream 185334 17696875 ~ 17741017 (+) False LOC122327646
XM_043223107.1 mRNA upstream 185334 17696875 ~ 17741017 (+) False LOC122327646
XM_043223110.1 mRNA upstream 185334 17696875 ~ 17741017 (+) False LOC122327646
XM_043223111.1 mRNA upstream 185334 17696875 ~ 17741017 (+) False LOC122327646
TU227461 other upstream 507118 17415453 ~ 17419233 (+) False tsc22d2
XR_006247623.1 other upstream 1180276 16600632 ~ 16746075 (+) False dock3
TU227194 other upstream 1426938 16493702 ~ 16499413 (+) True G153432
TU227165 other upstream 1540175 16317461 ~ 16386176 (+) False rpl32
unassigned_transcript_2576 other upstream 1776507 16149772 ~ 16149844 (+) True trnaa-agc_28

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU76610 True 1539 lncRNA 0.41 1 CI01000010 9562704 ~ 9564242 (-)