RNA id: XM_043222234.1


Basic Information

Item Value
RNA id XM_043222234.1
length 1745
RNA type mRNA
GC content 0.40
exon number 6
gene id yjefn3
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 9996479 ~ 10028474 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTGGGTTTATCAGCCAGTAAGCCAGTAGACAGAAGCAGGGCACacagtgagaaagagaaagagcaatAAGAGGGTGACTATTGCTAGAGATAAGCACGGCTGAATCAATCAAGATGAACCACAGCTCCAATGAGAAAGAACCTGAGACCATAGAGCCACTCCGTTATCTCAGTAAAACGGAGGCGGCGACTGTTGAGACGGAGCTCCTGAGGGACTATCGCTTCGGACAGCAGCAGCTGATTGAAATATGGGGCCATGCTTGCGCTGTCGCCATCACAAAGGCATTTCCTTTGAGCTCCCTGAGTAAAAAGCAGCCCACCCTGCTGGTTGTTTGTGGTCCTGAGCAAAACGGCTCCATTGGTTTGGTGTGTGCCCGCCATCTGCGCATGTTTGAATATGAGCCCACCATTTTCTATCCCAAGCGTTCTCCTCAGAGTTTGCACCAAGACTTCACCGTTCAGTGCGAGAAAATGGACATCCCTTTCTTGTCCTATCTTCCGACGGAGGTGCAGCTGTTGAATGATGCCTACAATGTGGTGATCGACGCCATCCTGGGACCAGAAACCGACCACAAGGAGGTTAAAGAGCCCTACGCTGGGATGCTGGTGACTCTCAAACAGGTCAAAATACCCATCGTTAGTGTGGACGTGCCCTCAGGTTGGGATGTTGACGAACCAGCCAAAGATGGGATAAATCCAGAAGTTCTCATTTCTCTGACGGCTCCCAAAAAGTGCGCAACGGGTTTCTCGGGAAAGCATTTTCTGGCGGGACGATTCCTGCCCTATGACATTCAGAAAAAATATGAACTTAATCTGCCAGAATTCCCCGGCACGGAATGTGTTATAGAACTGTAGCCATTTATACAGacttatattttgaataacaaggatgtttttccccttttgtattttatagatTGTTCTGTGGCATTCAGTTACTGACGAATATGACTAGACACTTTGAATAGTTGAGTTTTCTgtggaagcttgtttctgctacagaattataaaatgcataaggCAACAGCTAATGAATCTCCATTTGTGACTTTTATCTTGAAACTCTGAGTATGTATCCCAAACTcgcaattctgaggaaaaaaagaaaacgaaaaaagATTTCTCGCACTTTGGTTTACATCGCGCAATTCTCACTCTTTtcgctgttgttgtttttttgctacagaatttaaaaatactaatttatcattttgtgacttttttttcttgcagttgcGGCTTCTCAGAATCGTGAGTTTATATCTCTTGAGttataaactcacaattctgtttttagatctcactttttttctcagaattacaagaaaaaagaCGTAGttgtcttttacattttttttatcttgtagCAGAAACAAGGAATCAGTCCTAAGAGATGggtttagaattatttattcaattttgcAAATTTTTGACATTTACAGTGTGTCTGTTAAGTTCtcaaaaagtctttttaatgTTAGATATATTCAAAGTGCATTACCCTGATAGTGCCTCCAGTCTAATGTGCACGACACCTACAAACCCAACGCATTTCTGCTGGAATTTTACTCCAAtgacaaatgtatttatctgtACTTTATTTGACAGTTtgtatagtataataataatcccAGGATGACAAACGTgtgtaaatcattttgtttttactataGACTGCTCAATGTACATGTGTTTTCTTAGTTCTTATAggttgaatgaataaatgatctatgtaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247776.1 lncRNA upstream 33059 9923614 ~ 9963420 (+) False LOC122328159
TU223958 lncRNA upstream 99640 9896581 ~ 9896839 (+) True G151334
TU223956 lncRNA upstream 100179 9895441 ~ 9896300 (+) False mef2b
TU223957 lncRNA upstream 101152 9895046 ~ 9895327 (+) True G151333
TU223951 lncRNA upstream 102990 9888200 ~ 9893489 (+) True borcs8
TU223964 lncRNA downstream 25444 10053918 ~ 10079639 (+) False G151337
TU223965 lncRNA downstream 46362 10074836 ~ 10079639 (+) False G151337
TU223961 lncRNA downstream 46504 10074978 ~ 10080145 (+) True G151337
TU223999 lncRNA downstream 53308 10081782 ~ 10082620 (+) True G151358
XR_006247731.1 lncRNA downstream 108826 10137300 ~ 10140154 (+) True LOC122327864
XM_043223380.1 mRNA upstream 3038 9970622 ~ 9993441 (+) True gatad2ab
XM_043223381.1 mRNA upstream 3038 9972170 ~ 9993441 (+) False gatad2ab
XM_043223144.1 mRNA upstream 85686 9895748 ~ 9910793 (+) False mef2b
XM_043223410.1 mRNA downstream 2396 10030870 ~ 10044212 (+) True cilp2
XM_043223411.1 mRNA downstream 42342 10070816 ~ 10072852 (+) True si:ch211-212d10.1
XM_043223124.1 mRNA downstream 160740 10189214 ~ 10208785 (+) True cbarpb
XM_043223395.1 mRNA downstream 195116 10223590 ~ 10231309 (+) True fstl3
XM_043223041.1 mRNA downstream 210603 10239077 ~ 10249861 (+) False bsg
XR_006247720.1 other upstream 3038 9970622 ~ 9993441 (+) False gatad2ab
TU223980 other upstream 32845 9923547 ~ 9963634 (+) False LOC122328159
TU223981 other upstream 32845 9928679 ~ 9963634 (+) True LOC122328159
TU223982 other upstream 32845 9931139 ~ 9963634 (+) False LOC122328159
TU223952 other upstream 102990 9888200 ~ 9893489 (+) False borcs8
XR_006247780.1 other downstream 680570 10709044 ~ 10709110 (+) True LOC122328232
TU224353 other downstream 777578 10806052 ~ 10837365 (+) True G151620
TU224351 other downstream 787661 10816135 ~ 10837365 (+) False G151620
TU224458 other downstream 890586 10919060 ~ 10921928 (+) False si:dkey-172o19.2
XR_006247707.1 other downstream 1290215 11318689 ~ 11323940 (+) False mier2

Expression Profile