RNA id: XM_043222250.1


Basic Information

Item Value
RNA id XM_043222250.1
length 755
RNA type mRNA
GC content 0.44
exon number 5
gene id rpp21
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 8305664 ~ 8308413 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCTTTTGAGAAGCAGAAGGAATATAACGAGCACGCTGTCATGCTGTGTTCAGCAGAAGTTCACACTTTGGAGTTTCAAACACAGAGAAACGTCTCTCAAGAAACATGGCGGGgaatataaaagataaagaaGCATATCAACGGCTGAACTTCCTCTACCAGGCTGCTCACTGCGTTTTGGCTCAAAATCCAGAGAATGTTGAACTGGCAAGGTTTTACTGCCTCACTCAGAAGACCATCTCCAAACGACTGGTGCTCAGGCAAGATCCATCAATAAAGAGAACCGTCTGCAAAAAATGCTGCACTTTACTAATACCAGGTGTCACATCAACTGTACGACAAAAAAGAGGAGCAATGCGACAACGCAAGACTGTTGTGCGGTGTTTAAGTTGTGGACTGACCAAACATTTCCCAAACAACCCAAAACATAAACTGTGGGTGGATCAACCTGAGGCTCAACTAGAAAACCAGACCTCGCAAGATGCCGGTCCTTCATCTAAACCCGCAACCCAAGAGAAGTGCGATACTGACTCGGCATCCACGACTGCAAAGACTTCAGCCCAAACAAATGCGCCTAAACCTTCACGACACCCTACATACTAGTTAATATAACTACTTCAAGTCAACGGCGTTTTTgtcacactttttttgtatgcattttttttccccctccctGACATTAAGTGCaatatcgtttttttttcctcccgcATCTAATGGATGTTTTGAATTGCAATAAAGCGATTCTACTGTAA

Function

GO:

id name namespace
GO:0001682 tRNA 5'-leader removal biological_process
GO:0004526 ribonuclease P activity molecular_function

KEGG:

id description
K03540 RPR2, RPP21; ribonuclease P protein subunit RPR2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223217 lncRNA downstream 15004 8290346 ~ 8290660 (-) False tmem264
TU223173 lncRNA downstream 32493 8268848 ~ 8273171 (-) False G150785
TU223178 lncRNA downstream 33277 8227032 ~ 8272387 (-) False G150785
TU223172 lncRNA downstream 33277 8268848 ~ 8272387 (-) True G150785
TU223176 lncRNA downstream 33277 8268848 ~ 8272387 (-) False G150785
TU223491 lncRNA upstream 100903 8409316 ~ 8410129 (-) True G151017
TU223494 lncRNA upstream 104030 8412443 ~ 8412693 (-) True G151020
TU223490 lncRNA upstream 111221 8419634 ~ 8420740 (-) True G151016
TU223485 lncRNA upstream 160058 8468471 ~ 8469252 (-) True G151015
TU223507 lncRNA upstream 190713 8499126 ~ 8499361 (-) True G151029
XM_043222278.1 mRNA downstream 12456 8286372 ~ 8293208 (-) True tmem264
XM_043222457.1 mRNA downstream 92281 8200017 ~ 8213383 (-) True LOC122327250
XM_043223885.1 mRNA downstream 138696 8160428 ~ 8166968 (-) True LOC122328182
XM_043223540.1 mRNA downstream 209222 8083440 ~ 8096442 (-) True mfng
XM_043222226.1 mRNA downstream 239975 7970345 ~ 8065689 (-) False elfn2a
XM_043223925.1 mRNA upstream 66879 8375292 ~ 8390135 (-) True ankmy1
XM_043223930.1 mRNA upstream 82836 8391249 ~ 8394587 (-) True hsh2d
XM_043223932.1 mRNA upstream 86315 8394728 ~ 8407532 (-) False tpm4a
XM_043223933.1 mRNA upstream 86315 8394728 ~ 8403298 (-) True tpm4a
XM_043223931.1 mRNA upstream 87103 8395516 ~ 8403300 (-) False tpm4a
XR_006247718.1 other downstream 687266 7609856 ~ 7618398 (-) False LOC122327776
XR_006247717.1 other downstream 687266 7609856 ~ 7618398 (-) True LOC122327776
TU222808 other downstream 1250462 7030307 ~ 7055202 (-) False LOC122327113
TU222752 other downstream 1392106 6906000 ~ 6913558 (-) True G150492
TU222746 other downstream 1436118 6867843 ~ 6869546 (-) False mfsd6a
TU223633 other upstream 575708 8884121 ~ 8886941 (-) True G151107
XR_006247692.1 other upstream 705135 9013548 ~ 9171931 (-) False nfia
XR_006247693.1 other upstream 705135 9013548 ~ 9171929 (-) False nfia
XR_006247696.1 other upstream 705137 9013550 ~ 9171923 (-) False nfia
XR_006247694.1 other upstream 705137 9013550 ~ 9141867 (-) False nfia

Expression Profile