RNA id: XM_043222257.1


Basic Information

Item Value
RNA id XM_043222257.1
length 3545
RNA type mRNA
GC content 0.56
exon number 14
gene id wdr47b
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 12131968 ~ 12144436 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAACTCAACAGTGCAGTAGTTTACAGAGACACATGCACGCGTTTATATTTGGAGAGCGTTGCTCATCTGCATGCACCTCTAAGACTGTAGGTTGATATGAAGGTTTAGGAAAATGTTGTTAAGATGTTCATGATTTCAAACTGCATCACATTTTTATACACAGCAGACGTTCTCCAGATGAAAGGTTCTTTAGCAAGCATCTTGAAGACGTGCGTGCGTTGTTTAAAGTCATCTCAAGCGAGCTCCTCTTTCAGCGCCAAAATTCACCGATTAGGTCAGCGATGCACTCATCGATGAGTTCCTGGTGAGATCTCTTTTGTGAGTTCACAGCGCCACCGCGTGGCCGCGCAGCACAACGTCTGCTTTCTTGCAAGATTAAATAAATTCGCACCGCAATTGCTTCGCGTCATAAttttaagtaaagtaaaatgaGGGGGAAATAAGAAAACATTGTCCGTTTTACTCTCACCAAAAGAATTTTAACCCACGCAATGCTGCAATTTATATCCGCAAACTCACAATCTGTAAGAGAGCCTTCGCGGCGCTGAGCAGCGATGCAGTGGGTGTGTCCGGAGCAGCGCGTCTCTCCGCCGGTAACCGGcgctgccgccgccgccgctgaCGGAGAGAGGGAGACAGGCGGAAGGTGGGTGGGGACATCCGAGCCATTGTCGGGATAAACGCACCTCACGCTCGGGAGGCTGAACGCCGCGCTCGCGCTAATCCGCGCAGGAGAACACCGTCAAAGAAAACGAGCCGTCTTTGGCCGGAGCCTCGTTCTAGGAATCTGACACCATGACTGCAGAAGAGattataaacattaaagaaGCAGAGATAATCAAGCtgatcctggactttctgaaCTCCAGAAAGCTCCACATCAGTATGCTGGCCCTGGAAAAAGAGAGCGGCATCATTAATGGGCTTTATTCTGATGATATGCTCTTCCTGAGgCAACTTATATTAGACGGGCAATGGGAGGAAGTTTTGCAGTTCATCCAGCCTTTGGAGGGCCTGGATAAATTCGACAGAAAGAAatTTCGATATATCATCCTAAAACAGAAGTTTCTGGAAGCTCTGTGTGTAAACAACGCCATATCTGCAGCAGATGACCCTGAGAACCTGGAGCTGACTATGCAGGACGCGGTGAAGTCCCTTCACTCCCTGGAAGAGTTCTGCCCAAGCAAAGAAGACTACAGCAAGCTCTGCCTGCTCCTCACGCTCCCGCGCCTCACCCACCACGCCGAGTTCAAGGACTGGAACCCCAGCACGGCCCGCGTGCACTGCTTCGAAGAGGCCTGCTGCATGGTGGCCGAATTCATCCCGGCCGACCGCAAGCTGAGCGAAGCCGGATTCAAAGCCAGCAGCGACCGTCTGTTCCAGCTCCTCATCAAGGGAATCCTGTACGAATGCTGCGTGGAGTTCTGCCAGAGCAAAGCCACCGGAGAGGAGATCAGCGAGGAGGAGGTTCTCCTCGCCGTCGACGTCCTGTGCGGGAACGGCTGCGAGGAACTGGACTTGAGTTTGTTGTCTTGGCTGCAGAACCTCTCGCCGTCCGTCTTCGCTTGCGCGTTTGAGCAGAAGACCCTCAGCATCCATGTGGACCGGCTCGTTAAACCCCTCCGGACGGGGCACGCCGATCTTCTCACTCCTCTGCTCACCAAACTCTCACCCTGCCCAGCATCGCCTCTGCGCCGGCCCCAGTCGGCGGATACGTACATGTCCCGCTCTCTCAATCCTGCCCTGGACGGTCTGTCCCACGGCTTGGtgggaagagaaaagaaaagctcGGATGGAGACGGCAAAGCAGCTGCCATGTCACAGTCGTTCGCCAACTTTGGGTATCCTTCAGGAGGAAATGGAAGCAAAAACCCCTTGGATTCACCAGACAGAGCACCGGACGAAAGGACGAACGGCTCAGGAGCGGCAAACTCGCTGCGTCCTCCCCTGACTCCTGGCCGAGATGGAGGAGCCACGGGCTCAGCTGAGAAATCTGAGGAGCAGCTTCAGGAGTTCCAGCGTCAGCGTCTGCGGGTGCAGCAGCATCTGgagcagaagcagcagcagaggCAGCTGTACCATCAGATGCTGCTTGAGGGCGGCGTTCATCCCCCAGAGCAGCCCACAGACCCCACGCAGCCCAGCCTCACGCAGAAGTTCCTCAACAGGTCCATTCAGAAGCTAGAGGAGCTGAATGTGGGAATGGAGGACCTGGGTGAAGACGTCCAGGCTTTGGCCCAACAGTGTAACGGTACGACTGCGAGCGGAGCCGGGAAACAGACCCCAGAGACCGGCTCAGGCCGGAACAAGACCGCTGTGATCAGCAGCACCCCTCAGAAGGGAGGAGGCCGAAACGTCCCGTCTCTGGACGAGTCCCCAGTGCTGGTCAACCAGAGTGTGTTTCAGGATGAGAAAACCAAATCCCCGTTCGTTGCAGTGCAGACGCTGGAGGACACTCAGGCGGTGCGCGCCGTCGCCTTCCACCCGTCCGGGACACTCTACGCAATCGGCTCCAACTCCAAAACACTGCGTGTCTGCACGTACCCGCAGTCCCTCAAAACCAGCGCTCAGGGTCCAGTAAAGCCGCCCGAGATCTGCTTCAAGCGTATTAAACACCATAAAGGCTCTATTTACTGCGTGGCCTGGAGTCCCTGCGGGCAGCTTCTCGCCACGGGCTCCAATGACAAGTACGTCAAAGTTCTTCCGTTCAATGCGGACACCTGCAACGCCACAGGTCCAGATCTAGAGTTCAGCATGCATGACGGCACCATCAGAGACCTGGCGTTCATGGAGGGTCCCGAGAGCGGAGGGGCGATCCTGATCAGCGCTGGAGCTGGAGACTGTAACATCTACACTACTGACTGTCAGAGAGGACAGGGGCTGCACGCGCTCAGTggacacacagGACACATCCTGTCTCTGTACACGTGGGGCGGGTGGATGATCGCCTCCGGCTCTCAGGACAAGACGGTGAGGTTTTGGGACCTGCGTGTGCCCAGCTGTGTGAAGGTGGTCGGGACGGCCCTGCACGGAACAGGAAGTGCCGTGGCGTCGGTGGCAGTGGATCCCAGCGGGCGGCTCATGGCCACCGGATTGGAGGACTGTCGCTGCATGCTTTATGACATCAGAGGAGGCCGAAGCGTCCAGGCGTATCGTCCACACAGCAGTGACGTGCGCTCGGTGCGCTTCTCTCCGGGAGCACACTACCTGCTCACCGGCTCCTACGACAACAAGGTCATGATCACCGACCTTCAGGGGGATCTCACCAAAGCTCTGCCGGTGACGGCGGCCGCTGAACACGCTGATAAAGTGATCCAGTGCCGCTGGCACACCAGAGACCTGTCCTTCCTGTCCTCCTCCGCCGACAAGACGGTCACGCTCTGGGCCAATCAGCCCTAACCCCTAACACAAGAGCACAGAAAacacaggagtgtgtgtgtctgtgtgtgtgtgtctgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtctgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtctg

Function

GO: NA

KEGG:

id description
K24746 WDR47; WD repeat-containing protein 47

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224954 lncRNA upstream 83703 12045852 ~ 12048265 (+) True G151999
TU224891 lncRNA upstream 125386 12006268 ~ 12006582 (+) True G151976
TU224886 lncRNA upstream 139168 11992590 ~ 11992800 (+) True G151972
TU224834 lncRNA upstream 264427 11867082 ~ 11867541 (+) True G151936
TU224830 lncRNA upstream 296865 11826565 ~ 11835103 (+) False LOC122327134
TU224893 lncRNA downstream 17219 12161655 ~ 12235996 (+) False LOC122327127
TU224896 lncRNA downstream 17219 12161655 ~ 12263031 (+) False LOC122327127
TU224899 lncRNA downstream 17219 12161655 ~ 12263031 (+) False LOC122327127
TU224909 lncRNA downstream 17219 12161655 ~ 12263031 (+) False LOC122327127
TU224921 lncRNA downstream 17219 12161655 ~ 12235996 (+) False LOC122327127
XM_043222282.1 mRNA upstream 1653 12125493 ~ 12130315 (+) False LOC122327103
XM_043222281.1 mRNA upstream 1653 12125511 ~ 12130315 (+) False LOC122327103
XM_043222280.1 mRNA upstream 1653 12125512 ~ 12130315 (+) True LOC122327103
XM_043223758.1 mRNA upstream 8971 12087165 ~ 12122997 (+) True p3h2
XM_043222359.1 mRNA upstream 47407 12082421 ~ 12084561 (+) True LOC122327174
XM_043222373.1 mRNA downstream 1924 12146360 ~ 12152024 (+) True clcc1
XM_043222374.1 mRNA downstream 10086 12154522 ~ 12164257 (+) True mcoln2
XM_043222375.1 mRNA downstream 10086 12154522 ~ 12164257 (+) False mcoln2
XM_043222376.1 mRNA downstream 19946 12164382 ~ 12173298 (+) True lpar3
XM_043222287.1 mRNA downstream 31251 12175687 ~ 12189006 (+) True LOC122327107
TU224831 other upstream 298594 11827344 ~ 11833374 (+) False LOC122327134
TU224828 other upstream 307913 11822934 ~ 11824055 (+) False LOC122327289
XR_006247707.1 other upstream 808028 11318689 ~ 11323940 (+) False mier2
TU224458 other upstream 1210040 10919060 ~ 10921928 (+) False si:dkey-172o19.2
TU224351 other upstream 1294603 10816135 ~ 10837365 (+) False G151620
TU224914 other downstream 94346 12238782 ~ 12265692 (+) False LOC122327127
TU225002 other downstream 148964 12293400 ~ 12294717 (+) True G152032
TU225014 other downstream 200770 12345206 ~ 12345750 (+) True G152043
TU225015 other downstream 200770 12345206 ~ 12345750 (+) False G152043
TU225049 other downstream 264870 12409306 ~ 12423922 (+) True G152065

Expression Profile