RNA id: XM_043222263.1


Basic Information

Item Value
RNA id XM_043222263.1
length 1231
RNA type mRNA
GC content 0.38
exon number 3
gene id s100b
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 7387057 ~ 7389184 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCTTCTTGCCGGTAAGTCTAAAAACGTTGAGCGCCGCACCGCATTAAGATGTCAGACTTAGAGAACTGCCTGGGAACCATCATCGAGGTCTTCCACAAATACTCATCCAAAGAAGGCGACaagttcaaattaaaaaagacCGAACTCAAGGAGCTGCTCACGAATGAATTTCCGACTCTCACCGAGCATGTGAAAGATCAAGCAACAATGGACAGTTTGATGGAAAGCTTGGATACCGATGGCGACTCGGAGTGTGATTTCCAGGAGTTCATGACCTTCATCACCATGGTTACCATCTGCTGCCATGAGTTTTTCGAACACCACGAAGACGAATGAGTCGAATTTAACAAAACGAGTTCGGTTTTGGTAGTTTAATGAGTCCCAGTACATAAAGTTTGCTTTGTTCTTTATCGTATTATTTTAGGATTATTGTTTCGTTTGCACAGAACGTCCATGCAGCTTGTACGACAGTTTGTTTGGCTTATTTTTCTAGAATCAAAACTAGTTCGTAATTTATTACGAAGCATGTTTCTATTATGTTGCCTAGGCATCCCCATCATAAATCTCATTGAGTGAAACGCGGACCAGGTGTTGCGCTCTTGCCGTTTCAATTCCAGACtgattgtgaaatgtttttttttttctgattagcTTCAGACTATTAGGCTGCTATTGACTTACGTCGGATTGTTCCGGGGCCTGAGACAAATCATACCGTGCTTTAAAAAGACCCACCAAAGCGAATTATTCTTCTGAAAATATCTAATACGATGTTTACAACCATCCATAAATGATTTGGAACTTCAGATCAATCCCATGTGTTATTAGAGCCATGAAAACTCGACAGTTTTTCATGTATTGCATGTCCAGAATATTTACTAGCAGATTTTAATAGTACATGAAATGTGTTTTCCCGCTGTAACCTAAGCTAACAGCCGATCTCACAACAACAGGCTTAATTCATGAAGCAAATGGGCAAATCGTACATGAATCTACTGAATGCGACAATTTACTTACGAATGTATTACGGACAATTAAATTGTGTAATAAGGCCCTACAGTGAATGTTTCCTTATAAAGTTAAACAAAAGATGAACGAGTTTCAGAAGCCAAACTGTTAGAATTATGGAATAAAAACTAGCGAAATAAATTGTGAACATGAGATTCAAGTAACGTGTGGATTTTTGAAACATTGAAtgcattagttttaaaataaagatgttcAATAAAA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247596.1 lncRNA downstream 90502 7290672 ~ 7296555 (-) True LOC122327085
TU222856 lncRNA downstream 155569 7230690 ~ 7231488 (-) True G150571
TU222848 lncRNA downstream 190374 7196353 ~ 7196683 (-) True G150564
XR_006247727.1 lncRNA downstream 212612 7171342 ~ 7174445 (-) True LOC122327846
TU222806 lncRNA downstream 364360 7022401 ~ 7022697 (-) True G150542
TU222888 lncRNA upstream 20294 7409413 ~ 7423399 (-) True G150596
TU222918 lncRNA upstream 61129 7450248 ~ 7469574 (-) True LOC122327668
XR_006247703.1 lncRNA upstream 80353 7469472 ~ 7470144 (-) False LOC122327668
TU222925 lncRNA upstream 94745 7483864 ~ 7484934 (-) True G150626
TU222928 lncRNA upstream 97057 7486176 ~ 7498489 (-) True G150628
XM_043223787.1 mRNA downstream 103272 7234901 ~ 7283785 (-) False cntnap5b
XM_043223788.1 mRNA downstream 103283 7234901 ~ 7283774 (-) False cntnap5b
XM_043223786.1 mRNA downstream 103283 7234901 ~ 7283774 (-) True cntnap5b
XM_043223523.1 mRNA downstream 280417 7058157 ~ 7106640 (-) True ahr2
XM_043222295.1 mRNA downstream 331495 7020754 ~ 7055562 (-) True LOC122327113
XM_043223138.1 mRNA upstream 105542 7494661 ~ 7514404 (-) True aox5
XM_043223417.1 mRNA upstream 125620 7514739 ~ 7515901 (-) True LOC122327800
XM_043222302.1 mRNA upstream 128681 7517800 ~ 7518955 (-) True LOC122327121
XM_043222303.1 mRNA upstream 132599 7521718 ~ 7522892 (-) True LOC122327123
XM_043222240.1 mRNA upstream 135317 7524436 ~ 7525617 (-) True LOC122327064
TU222808 other downstream 331855 7030307 ~ 7055202 (-) False LOC122327113
TU222752 other downstream 473499 6906000 ~ 6913558 (-) True G150492
TU222739 other downstream 497400 6854770 ~ 6889657 (-) False nab1a
XR_006247718.1 other upstream 220737 7609856 ~ 7618398 (-) False LOC122327776
XR_006247717.1 other upstream 220737 7609856 ~ 7618398 (-) True LOC122327776
TU223633 other upstream 1495002 8884121 ~ 8886941 (-) True G151107
XR_006247692.1 other upstream 1624429 9013548 ~ 9171931 (-) False nfia
XR_006247693.1 other upstream 1624429 9013548 ~ 9171929 (-) False nfia

Expression Profile